Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30406 | 3' | -53.9 | NC_006548.1 | + | 4124 | 0.66 | 0.765006 |
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Target: 5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3' miRNA: 3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 3435 | 0.66 | 0.754613 |
|
Target: 5'- cGCGUCacccuguGCGAgGAgCAgCGCCGugGCc -3' miRNA: 3'- cCGCAGc------UGCUgUU-GUaGCGGCugCG- -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 2950 | 0.71 | 0.422189 |
|
Target: 5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3' miRNA: 3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 2659 | 0.69 | 0.545885 |
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Target: 5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3' miRNA: 3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 2241 | 0.66 | 0.733452 |
|
Target: 5'- aGGCGUaGcCGGuCAGCuccggCGCCGcCGCg -3' miRNA: 3'- -CCGCAgCuGCU-GUUGua---GCGGCuGCG- -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 2130 | 1.15 | 0.000467 |
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Target: 5'- gGGCGUCGACGACAACAUCGCCGACGCg -3' miRNA: 3'- -CCGCAGCUGCUGUUGUAGCGGCUGCG- -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 2098 | 0.68 | 0.645575 |
|
Target: 5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3' miRNA: 3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 2065 | 0.86 | 0.051658 |
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Target: 5'- cGCGUCGGCGAUGuuGUCGUCGACGCc -3' miRNA: 3'- cCGCAGCUGCUGUugUAGCGGCUGCG- -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 1148 | 0.66 | 0.744091 |
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Target: 5'- gGGCGUCaGCGAUgcugAGCugCGCCGGCu- -3' miRNA: 3'- -CCGCAGcUGCUG----UUGuaGCGGCUGcg -5' |
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| 30406 | 3' | -53.9 | NC_006548.1 | + | 1068 | 0.76 | 0.224756 |
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Target: 5'- -aUGUCGACGACccAgccggcgcagcucaGCAUCGCUGACGCc -3' miRNA: 3'- ccGCAGCUGCUG--U--------------UGUAGCGGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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