miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 20063 0.68 0.634417
Target:  5'- aGGUG-CG-CGACGGCAUgcucuaUGCCGAgcCGCa -3'
miRNA:   3'- -CCGCaGCuGCUGUUGUA------GCGGCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 27002 0.67 0.656721
Target:  5'- aGCGUCGGCGA----GUcCGCCGAUcaGCa -3'
miRNA:   3'- cCGCAGCUGCUguugUA-GCGGCUG--CG- -5'
30406 3' -53.9 NC_006548.1 + 35194 0.67 0.667843
Target:  5'- aGGC--CGAgGGCGGCAUCGuuGGgcCGCu -3'
miRNA:   3'- -CCGcaGCUgCUGUUGUAGCggCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 5310 0.67 0.667843
Target:  5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3'
miRNA:   3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 36623 0.67 0.667843
Target:  5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3'
miRNA:   3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 24967 0.67 0.678931
Target:  5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3'
miRNA:   3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 17399 0.67 0.678931
Target:  5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3'
miRNA:   3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5'
30406 3' -53.9 NC_006548.1 + 29410 0.67 0.678931
Target:  5'- aGGCGgucagccgaUCGcUGGcCGACGUUGCCG-CGCa -3'
miRNA:   3'- -CCGC---------AGCuGCU-GUUGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 23315 0.66 0.711874
Target:  5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3'
miRNA:   3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 37669 0.66 0.755658
Target:  5'- aGGuCGUCGACucggguggauguauCGACGUCGCUGcaucgaacACGCu -3'
miRNA:   3'- -CC-GCAGCUGcu------------GUUGUAGCGGC--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.