miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 5' -53.7 NC_006548.1 + 5179 0.66 0.704779
Target:  5'- -cGCGaGGCGAuGUAUCACGUcgcccgacaUGACGg -3'
miRNA:   3'- caUGUaCCGCUuCGUGGUGCG---------ACUGC- -5'
30406 5' -53.7 NC_006548.1 + 12637 0.66 0.704779
Target:  5'- -aAguUGGCGGccgAGCGCCcggcguugaaGCGCUcGACGg -3'
miRNA:   3'- caUguACCGCU---UCGUGG----------UGCGA-CUGC- -5'
30406 5' -53.7 NC_006548.1 + 19072 0.66 0.704779
Target:  5'- -aGCAUGGC-AGGCAUCACcCUGGa- -3'
miRNA:   3'- caUGUACCGcUUCGUGGUGcGACUgc -5'
30406 5' -53.7 NC_006548.1 + 4195 0.66 0.682154
Target:  5'- -aACAgccGGCGAucgAGCACCgACGuCUGAUc -3'
miRNA:   3'- caUGUa--CCGCU---UCGUGG-UGC-GACUGc -5'
30406 5' -53.7 NC_006548.1 + 18150 0.66 0.670757
Target:  5'- cUugGUGGCGAAcGCACUAUccgcccaaugGCUGGgGa -3'
miRNA:   3'- cAugUACCGCUU-CGUGGUG----------CGACUgC- -5'
30406 5' -53.7 NC_006548.1 + 27213 0.66 0.659321
Target:  5'- -aGCAggcGGCGAccgAGCAaCGCGCUGcCGa -3'
miRNA:   3'- caUGUa--CCGCU---UCGUgGUGCGACuGC- -5'
30406 5' -53.7 NC_006548.1 + 22140 0.67 0.636377
Target:  5'- cUACAUcGGCGAAGCGCg--GCUGAa- -3'
miRNA:   3'- cAUGUA-CCGCUUCGUGgugCGACUgc -5'
30406 5' -53.7 NC_006548.1 + 16981 0.67 0.624893
Target:  5'- aUGCA-GGCGGAGCugCugGaagccgGGCGc -3'
miRNA:   3'- cAUGUaCCGCUUCGugGugCga----CUGC- -5'
30406 5' -53.7 NC_006548.1 + 13911 0.67 0.613416
Target:  5'- --cCcgGcGCGAAGCcCUGCGCUGGCu -3'
miRNA:   3'- cauGuaC-CGCUUCGuGGUGCGACUGc -5'
30406 5' -53.7 NC_006548.1 + 6636 0.68 0.567788
Target:  5'- -aGCGUGGUGGAGCcgaCAUGCUccacGGCGu -3'
miRNA:   3'- caUGUACCGCUUCGug-GUGCGA----CUGC- -5'
30406 5' -53.7 NC_006548.1 + 7214 0.68 0.545277
Target:  5'- gGUGCGUGaGCGc-GCACCGCGUaaGCGg -3'
miRNA:   3'- -CAUGUAC-CGCuuCGUGGUGCGacUGC- -5'
30406 5' -53.7 NC_006548.1 + 31865 0.69 0.518659
Target:  5'- gGUACAUcGGCGAAGCGCCugauuucggucugUGCcgGAUGg -3'
miRNA:   3'- -CAUGUA-CCGCUUCGUGGu------------GCGa-CUGC- -5'
30406 5' -53.7 NC_006548.1 + 3859 0.69 0.512084
Target:  5'- aGUGCAUGGCGGucuaccugcaggAGCGgCGCGCUcaGCa -3'
miRNA:   3'- -CAUGUACCGCU------------UCGUgGUGCGAc-UGc -5'
30406 5' -53.7 NC_006548.1 + 1194 0.69 0.512084
Target:  5'- -cACA-GGCGuuGCugGCCGCGCaGACGg -3'
miRNA:   3'- caUGUaCCGCuuCG--UGGUGCGaCUGC- -5'
30406 5' -53.7 NC_006548.1 + 1519 0.69 0.50012
Target:  5'- -----cGGCGAccgccucGGCGCgAUGCUGACGu -3'
miRNA:   3'- cauguaCCGCU-------UCGUGgUGCGACUGC- -5'
30406 5' -53.7 NC_006548.1 + 25846 0.69 0.479755
Target:  5'- cGUGCgauGUGGCGGAuGuCACCGCcuGCUGGCc -3'
miRNA:   3'- -CAUG---UACCGCUU-C-GUGGUG--CGACUGc -5'
30406 5' -53.7 NC_006548.1 + 37389 0.71 0.370943
Target:  5'- -aGCGUGGCGAcGCGCC-CcUUGACGa -3'
miRNA:   3'- caUGUACCGCUuCGUGGuGcGACUGC- -5'
30406 5' -53.7 NC_006548.1 + 28400 0.72 0.344327
Target:  5'- aGUACAUGGCaaGGGUucaguCCGCGCUcGACGa -3'
miRNA:   3'- -CAUGUACCGc-UUCGu----GGUGCGA-CUGC- -5'
30406 5' -53.7 NC_006548.1 + 17451 0.73 0.303086
Target:  5'- -aGCAgcGGCGAuGGCGCCGCaGCUGGCc -3'
miRNA:   3'- caUGUa-CCGCU-UCGUGGUG-CGACUGc -5'
30406 5' -53.7 NC_006548.1 + 2095 1.09 0.000873
Target:  5'- cGUACAUGGCGAAGCACCACGCUGACGu -3'
miRNA:   3'- -CAUGUACCGCUUCGUGGUGCGACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.