Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 5' | -53.7 | NC_006548.1 | + | 37389 | 0.71 | 0.370943 |
Target: 5'- -aGCGUGGCGAcGCGCC-CcUUGACGa -3' miRNA: 3'- caUGUACCGCUuCGUGGuGcGACUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 31865 | 0.69 | 0.518659 |
Target: 5'- gGUACAUcGGCGAAGCGCCugauuucggucugUGCcgGAUGg -3' miRNA: 3'- -CAUGUA-CCGCUUCGUGGu------------GCGa-CUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 28400 | 0.72 | 0.344327 |
Target: 5'- aGUACAUGGCaaGGGUucaguCCGCGCUcGACGa -3' miRNA: 3'- -CAUGUACCGc-UUCGu----GGUGCGA-CUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 27213 | 0.66 | 0.659321 |
Target: 5'- -aGCAggcGGCGAccgAGCAaCGCGCUGcCGa -3' miRNA: 3'- caUGUa--CCGCU---UCGUgGUGCGACuGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 25846 | 0.69 | 0.479755 |
Target: 5'- cGUGCgauGUGGCGGAuGuCACCGCcuGCUGGCc -3' miRNA: 3'- -CAUG---UACCGCUU-C-GUGGUG--CGACUGc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 22140 | 0.67 | 0.636377 |
Target: 5'- cUACAUcGGCGAAGCGCg--GCUGAa- -3' miRNA: 3'- cAUGUA-CCGCUUCGUGgugCGACUgc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 19072 | 0.66 | 0.704779 |
Target: 5'- -aGCAUGGC-AGGCAUCACcCUGGa- -3' miRNA: 3'- caUGUACCGcUUCGUGGUGcGACUgc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 18150 | 0.66 | 0.670757 |
Target: 5'- cUugGUGGCGAAcGCACUAUccgcccaaugGCUGGgGa -3' miRNA: 3'- cAugUACCGCUU-CGUGGUG----------CGACUgC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 17451 | 0.73 | 0.303086 |
Target: 5'- -aGCAgcGGCGAuGGCGCCGCaGCUGGCc -3' miRNA: 3'- caUGUa-CCGCU-UCGUGGUG-CGACUGc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 16981 | 0.67 | 0.624893 |
Target: 5'- aUGCA-GGCGGAGCugCugGaagccgGGCGc -3' miRNA: 3'- cAUGUaCCGCUUCGugGugCga----CUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 13911 | 0.67 | 0.613416 |
Target: 5'- --cCcgGcGCGAAGCcCUGCGCUGGCu -3' miRNA: 3'- cauGuaC-CGCUUCGuGGUGCGACUGc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 12637 | 0.66 | 0.704779 |
Target: 5'- -aAguUGGCGGccgAGCGCCcggcguugaaGCGCUcGACGg -3' miRNA: 3'- caUguACCGCU---UCGUGG----------UGCGA-CUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 7214 | 0.68 | 0.545277 |
Target: 5'- gGUGCGUGaGCGc-GCACCGCGUaaGCGg -3' miRNA: 3'- -CAUGUAC-CGCuuCGUGGUGCGacUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 6636 | 0.68 | 0.567788 |
Target: 5'- -aGCGUGGUGGAGCcgaCAUGCUccacGGCGu -3' miRNA: 3'- caUGUACCGCUUCGug-GUGCGA----CUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 5179 | 0.66 | 0.704779 |
Target: 5'- -cGCGaGGCGAuGUAUCACGUcgcccgacaUGACGg -3' miRNA: 3'- caUGUaCCGCUuCGUGGUGCG---------ACUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 4195 | 0.66 | 0.682154 |
Target: 5'- -aACAgccGGCGAucgAGCACCgACGuCUGAUc -3' miRNA: 3'- caUGUa--CCGCU---UCGUGG-UGC-GACUGc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 3859 | 0.69 | 0.512084 |
Target: 5'- aGUGCAUGGCGGucuaccugcaggAGCGgCGCGCUcaGCa -3' miRNA: 3'- -CAUGUACCGCU------------UCGUgGUGCGAc-UGc -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 2095 | 1.09 | 0.000873 |
Target: 5'- cGUACAUGGCGAAGCACCACGCUGACGu -3' miRNA: 3'- -CAUGUACCGCUUCGUGGUGCGACUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 1519 | 0.69 | 0.50012 |
Target: 5'- -----cGGCGAccgccucGGCGCgAUGCUGACGu -3' miRNA: 3'- cauguaCCGCU-------UCGUGgUGCGACUGC- -5' |
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30406 | 5' | -53.7 | NC_006548.1 | + | 1194 | 0.69 | 0.512084 |
Target: 5'- -cACA-GGCGuuGCugGCCGCGCaGACGg -3' miRNA: 3'- caUGUaCCGCuuCG--UGGUGCGaCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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