Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30407 | 3' | -57.9 | NC_006548.1 | + | 25708 | 0.82 | 0.035644 |
Target: 5'- gGC--ACCAGGUGCUGGAGCGGCAa- -3' miRNA: 3'- gCGgaUGGUCCACGACCUCGCUGUcg -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 6083 | 0.66 | 0.475553 |
Target: 5'- uCGC--GCCAGGgGUUGcGGGUGAuCAGCa -3' miRNA: 3'- -GCGgaUGGUCCaCGAC-CUCGCU-GUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 37254 | 0.66 | 0.455269 |
Target: 5'- gGCCUGCCGGGaGaaGG-GCauuACAGCg -3' miRNA: 3'- gCGGAUGGUCCaCgaCCuCGc--UGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 33122 | 0.66 | 0.445304 |
Target: 5'- uGCCcucgacaacaUACCGGG-GCUGGccGGUgcucgGGCAGCg -3' miRNA: 3'- gCGG----------AUGGUCCaCGACC--UCG-----CUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 15231 | 0.67 | 0.40671 |
Target: 5'- uGCCUAuCCGGGcaucacCUGGGGUGGC-GCu -3' miRNA: 3'- gCGGAU-GGUCCac----GACCUCGCUGuCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 35930 | 0.67 | 0.405773 |
Target: 5'- gGCCUACCGaccGGcgaGUUGGccggcagGGUGGCGGCg -3' miRNA: 3'- gCGGAUGGU---CCa--CGACC-------UCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 30417 | 0.67 | 0.401104 |
Target: 5'- gCGCCUGauGGGcggcacggcguucaaUGCUGGGGCGAUcccgcccgguGGCg -3' miRNA: 3'- -GCGGAUggUCC---------------ACGACCUCGCUG----------UCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 4765 | 0.67 | 0.388217 |
Target: 5'- gCGCU--UCAGGUGCUuGAGCGuggcgauCGGCa -3' miRNA: 3'- -GCGGauGGUCCACGAcCUCGCu------GUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 17613 | 0.68 | 0.361533 |
Target: 5'- gGCCaugGCCgAGGgGCUGGAG--GCAGCu -3' miRNA: 3'- gCGGa--UGG-UCCaCGACCUCgcUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 20090 | 0.68 | 0.352074 |
Target: 5'- aGCCgcACCAGGUGgUgccGGAGUucgccgaGGCGGCg -3' miRNA: 3'- gCGGa-UGGUCCACgA---CCUCG-------CUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 19331 | 0.68 | 0.336152 |
Target: 5'- uGCgCUACCA---GCUGGA-CGGCAGCg -3' miRNA: 3'- gCG-GAUGGUccaCGACCUcGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 27333 | 0.69 | 0.289369 |
Target: 5'- uCGCUcGCCuGGccgaGCaGGAGCGGCAGUu -3' miRNA: 3'- -GCGGaUGGuCCa---CGaCCUCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 20037 | 0.68 | 0.327985 |
Target: 5'- gGCCUauggcuggGCCaaGGGU-CUGGAggugcGCGACGGCa -3' miRNA: 3'- gCGGA--------UGG--UCCAcGACCU-----CGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 22806 | 0.83 | 0.028932 |
Target: 5'- gGCgCUACCAGGUGCUGcucAGCGACGGUu -3' miRNA: 3'- gCG-GAUGGUCCACGACc--UCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 14369 | 0.82 | 0.038968 |
Target: 5'- uCGCUacgGCCAGaaGCUGGAGCGGCGGCu -3' miRNA: 3'- -GCGGa--UGGUCcaCGACCUCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 36827 | 0.79 | 0.060695 |
Target: 5'- gCGCCUgGCCGGGUGCUGGuGUGugGuGUg -3' miRNA: 3'- -GCGGA-UGGUCCACGACCuCGCugU-CG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 33383 | 0.75 | 0.126435 |
Target: 5'- cCGCCgACCuGGUGCUGGucgacacaguggcuGCGAcCAGCu -3' miRNA: 3'- -GCGGaUGGuCCACGACCu-------------CGCU-GUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 29651 | 0.72 | 0.194947 |
Target: 5'- uGCCgcUGCCAgcGGUGCcGGuGCGGCAGg -3' miRNA: 3'- gCGG--AUGGU--CCACGaCCuCGCUGUCg -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 16465 | 0.71 | 0.229007 |
Target: 5'- uCGCCcgaucgACCAGGcUGCggcagagcaccUGGAGCaGCAGCu -3' miRNA: 3'- -GCGGa-----UGGUCC-ACG-----------ACCUCGcUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 7292 | 0.71 | 0.23515 |
Target: 5'- gGUCaACCAGGcGCUGGGuGaUGACGGCa -3' miRNA: 3'- gCGGaUGGUCCaCGACCU-C-GCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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