miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30409 3' -54.5 NC_006548.1 + 7833 0.66 0.646362
Target:  5'- aGACGACAUCGag--CGcAUGAGCuGCCg -3'
miRNA:   3'- -CUGUUGUAGCggaaGC-UGCUCG-CGGa -5'
30409 3' -54.5 NC_006548.1 + 29421 0.66 0.634972
Target:  5'- aGCGACAgggUGCCaUCGGCGAgaccGCGCa- -3'
miRNA:   3'- cUGUUGUa--GCGGaAGCUGCU----CGCGga -5'
30409 3' -54.5 NC_006548.1 + 20049 0.66 0.623579
Target:  5'- uGACgAGCGggGCC-UCGcUGAGCGCCg -3'
miRNA:   3'- -CUG-UUGUagCGGaAGCuGCUCGCGGa -5'
30409 3' -54.5 NC_006548.1 + 24489 0.67 0.58949
Target:  5'- -uUAACAUCaCCUaCGACGAGUGgCUg -3'
miRNA:   3'- cuGUUGUAGcGGAaGCUGCUCGCgGA- -5'
30409 3' -54.5 NC_006548.1 + 19910 0.67 0.58949
Target:  5'- cGGC-ACGUCGCUcUCGAUGGuCGCCc -3'
miRNA:   3'- -CUGuUGUAGCGGaAGCUGCUcGCGGa -5'
30409 3' -54.5 NC_006548.1 + 25001 0.67 0.58949
Target:  5'- cGugAGCuggaaGUUGCCguacucgucgUUGAUGAGCGCCa -3'
miRNA:   3'- -CugUUG-----UAGCGGa---------AGCUGCUCGCGGa -5'
30409 3' -54.5 NC_006548.1 + 1093 0.67 0.56694
Target:  5'- -uCAGCAUCGCUgacgcccaaUUCG-CGAGCgaGCCUg -3'
miRNA:   3'- cuGUUGUAGCGG---------AAGCuGCUCG--CGGA- -5'
30409 3' -54.5 NC_006548.1 + 9459 0.67 0.56694
Target:  5'- --gAGCAUCaGCCggUCGAUGAggcguucgGCGCCUg -3'
miRNA:   3'- cugUUGUAG-CGGa-AGCUGCU--------CGCGGA- -5'
30409 3' -54.5 NC_006548.1 + 34518 0.67 0.56694
Target:  5'- gGGCAA-GUCGCCgUUCGACG-GCGaCCc -3'
miRNA:   3'- -CUGUUgUAGCGG-AAGCUGCuCGC-GGa -5'
30409 3' -54.5 NC_006548.1 + 31853 0.67 0.555745
Target:  5'- aGCAGCGuUCGagguaCaUCGGCGaAGCGCCUg -3'
miRNA:   3'- cUGUUGU-AGCg----GaAGCUGC-UCGCGGA- -5'
30409 3' -54.5 NC_006548.1 + 799 0.67 0.555745
Target:  5'- cGACAAgAUCGCCaagcagaugUUCGGCGuG-GCCa -3'
miRNA:   3'- -CUGUUgUAGCGG---------AAGCUGCuCgCGGa -5'
30409 3' -54.5 NC_006548.1 + 17534 0.67 0.555745
Target:  5'- cGACAggcuGCAUCG-CUUCGGCcagcugcGGCGCCa -3'
miRNA:   3'- -CUGU----UGUAGCgGAAGCUGc------UCGCGGa -5'
30409 3' -54.5 NC_006548.1 + 24038 0.68 0.544615
Target:  5'- gGACGAguUgGCagUCG-CGAGCGCCUg -3'
miRNA:   3'- -CUGUUguAgCGgaAGCuGCUCGCGGA- -5'
30409 3' -54.5 NC_006548.1 + 14234 0.68 0.533559
Target:  5'- gGACcAgGUCcggGCCUacaUCGAgGGGCGCCUg -3'
miRNA:   3'- -CUGuUgUAG---CGGA---AGCUgCUCGCGGA- -5'
30409 3' -54.5 NC_006548.1 + 22770 0.68 0.500904
Target:  5'- cGGCGGaGUCGCCUUugcggaucgcCGACGAG-GCCg -3'
miRNA:   3'- -CUGUUgUAGCGGAA----------GCUGCUCgCGGa -5'
30409 3' -54.5 NC_006548.1 + 20669 0.68 0.500904
Target:  5'- aGCGcCAaCGCCagcUCGACGAGCGCg- -3'
miRNA:   3'- cUGUuGUaGCGGa--AGCUGCUCGCGga -5'
30409 3' -54.5 NC_006548.1 + 18440 0.68 0.490214
Target:  5'- aGCGGCGUgGUCUUCuGCaGGGCGCCc -3'
miRNA:   3'- cUGUUGUAgCGGAAGcUG-CUCGCGGa -5'
30409 3' -54.5 NC_006548.1 + 21365 0.69 0.47963
Target:  5'- --uGACGUUGCCgccguacUCGACcGGCGCCa -3'
miRNA:   3'- cugUUGUAGCGGa------AGCUGcUCGCGGa -5'
30409 3' -54.5 NC_006548.1 + 17483 0.7 0.428508
Target:  5'- cGACGGCugAUCGCCcUCGGCGAacucgguggaagGCGUCg -3'
miRNA:   3'- -CUGUUG--UAGCGGaAGCUGCU------------CGCGGa -5'
30409 3' -54.5 NC_006548.1 + 2121 0.7 0.408976
Target:  5'- cGACAACAUCGCCgacgCGAUccaGGCGUa- -3'
miRNA:   3'- -CUGUUGUAGCGGaa--GCUGc--UCGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.