miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3041 3' -60.3 NC_001493.1 + 80822 0.66 0.734698
Target:  5'- uGuCCGUCCCCGUGacauGAGccgcGACGaacGGGGCu -3'
miRNA:   3'- gC-GGUAGGGGCAC----CUU----CUGU---CCCCGc -5'
3041 3' -60.3 NC_001493.1 + 174 0.66 0.734698
Target:  5'- gGCCccgCCCCcuuUGGcGAGACcccaaGGGGGCGu -3'
miRNA:   3'- gCGGua-GGGGc--ACC-UUCUG-----UCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 115728 0.66 0.734698
Target:  5'- gGCCccgCCCCcuuUGGcGAGACcccaaGGGGGCGu -3'
miRNA:   3'- gCGGua-GGGGc--ACC-UUCUG-----UCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 26486 0.66 0.734698
Target:  5'- -cCCGUgUCCGagagcguccaUGGGAGAgGGGGGUGg -3'
miRNA:   3'- gcGGUAgGGGC----------ACCUUCUgUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 31853 0.66 0.725112
Target:  5'- gCGCuCGUugugcUCCCGagGGGAGACGGGGaCGa -3'
miRNA:   3'- -GCG-GUA-----GGGGCa-CCUUCUGUCCCcGC- -5'
3041 3' -60.3 NC_001493.1 + 37987 0.66 0.71545
Target:  5'- aGuCCAcgaCCCCG-GGuacGAUGGGGGCGa -3'
miRNA:   3'- gC-GGUa--GGGGCaCCuu-CUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 62221 0.66 0.71545
Target:  5'- aGCUAUCCCaacGGgcGACGaccGGGGCu -3'
miRNA:   3'- gCGGUAGGGgcaCCuuCUGU---CCCCGc -5'
3041 3' -60.3 NC_001493.1 + 15600 0.66 0.699853
Target:  5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3'
miRNA:   3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 131155 0.66 0.699853
Target:  5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3'
miRNA:   3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 74602 0.66 0.695931
Target:  5'- uGCUaAUCCagCGauucaGGGAGGCGGGGGUGa -3'
miRNA:   3'- gCGG-UAGGg-GCa----CCUUCUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 113457 0.66 0.686091
Target:  5'- uGUCcUCCCUGUGGAccuuGGGaGGGGGUu -3'
miRNA:   3'- gCGGuAGGGGCACCU----UCUgUCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 31057 0.66 0.676209
Target:  5'- aCGCCGUgaCCgGUGGc--AUGGGGGCGa -3'
miRNA:   3'- -GCGGUAg-GGgCACCuucUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 119174 0.67 0.666292
Target:  5'- cCGCCGcCCCCGcgaauaccGGuucGcACAGGGGCGc -3'
miRNA:   3'- -GCGGUaGGGGCa-------CCuu-C-UGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 3620 0.67 0.666292
Target:  5'- cCGCCGcCCCCGcgaauaccGGuucGcACAGGGGCGc -3'
miRNA:   3'- -GCGGUaGGGGCa-------CCuu-C-UGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 24247 0.67 0.65635
Target:  5'- uCGCCAgccCCCCGUGGuguaACAGGaGUGu -3'
miRNA:   3'- -GCGGUa--GGGGCACCuuc-UGUCCcCGC- -5'
3041 3' -60.3 NC_001493.1 + 94667 0.67 0.616471
Target:  5'- gCGCCAgaaacggCCCUGcGGggGACAcgaGGGGa- -3'
miRNA:   3'- -GCGGUa------GGGGCaCCuuCUGU---CCCCgc -5'
3041 3' -60.3 NC_001493.1 + 112488 0.67 0.615474
Target:  5'- uGCCG-CUCCaUGGggGAgcccgugaggauaCGGGGGCGc -3'
miRNA:   3'- gCGGUaGGGGcACCuuCU-------------GUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 24565 0.68 0.600544
Target:  5'- gGCCGUUCCCGUGGAAcuGACcgAGGacacguuuuacaaguGGCu -3'
miRNA:   3'- gCGGUAGGGGCACCUU--CUG--UCC---------------CCGc -5'
3041 3' -60.3 NC_001493.1 + 46544 0.68 0.575781
Target:  5'- cCGCgAUCCaCGUacaucauGGAccucGACAGGGGCGa -3'
miRNA:   3'- -GCGgUAGGgGCA-------CCUu---CUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 128417 0.68 0.56692
Target:  5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3'
miRNA:   3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.