Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3041 | 3' | -60.3 | NC_001493.1 | + | 46544 | 0.68 | 0.575781 |
Target: 5'- cCGCgAUCCaCGUacaucauGGAccucGACAGGGGCGa -3' miRNA: 3'- -GCGgUAGGgGCA-------CCUu---CUGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 2682 | 0.68 | 0.557115 |
Target: 5'- uCGuCCGUCUUCGUGaGggGugGGaGGGCc -3' miRNA: 3'- -GC-GGUAGGGGCAC-CuuCugUC-CCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 14865 | 0.68 | 0.557115 |
Target: 5'- cCGUCAUCaucaCCGUGGGugcucucgucgAGACgcgAGGGGCc -3' miRNA: 3'- -GCGGUAGg---GGCACCU-----------UCUG---UCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 118236 | 0.68 | 0.557115 |
Target: 5'- uCGuCCGUCUUCGUGaGggGugGGaGGGCc -3' miRNA: 3'- -GC-GGUAGGGGCAC-CuuCugUC-CCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 130419 | 0.68 | 0.557115 |
Target: 5'- cCGUCAUCaucaCCGUGGGugcucucgucgAGACgcgAGGGGCc -3' miRNA: 3'- -GCGGUAGg---GGCACCU-----------UCUG---UCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 62332 | 0.68 | 0.56692 |
Target: 5'- gGCUAUCa--GUGGGuucuccGGCGGGGGCGg -3' miRNA: 3'- gCGGUAGgggCACCUu-----CUGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 24565 | 0.68 | 0.600544 |
Target: 5'- gGCCGUUCCCGUGGAAcuGACcgAGGacacguuuuacaaguGGCu -3' miRNA: 3'- gCGGUAGGGGCACCUU--CUG--UCC---------------CCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 112488 | 0.67 | 0.615474 |
Target: 5'- uGCCG-CUCCaUGGggGAgcccgugaggauaCGGGGGCGc -3' miRNA: 3'- gCGGUaGGGGcACCuuCU-------------GUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 3620 | 0.67 | 0.666292 |
Target: 5'- cCGCCGcCCCCGcgaauaccGGuucGcACAGGGGCGc -3' miRNA: 3'- -GCGGUaGGGGCa-------CCuu-C-UGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 119174 | 0.67 | 0.666292 |
Target: 5'- cCGCCGcCCCCGcgaauaccGGuucGcACAGGGGCGc -3' miRNA: 3'- -GCGGUaGGGGCa-------CCuu-C-UGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 94667 | 0.67 | 0.616471 |
Target: 5'- gCGCCAgaaacggCCCUGcGGggGACAcgaGGGGa- -3' miRNA: 3'- -GCGGUa------GGGGCaCCuuCUGU---CCCCgc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 24247 | 0.67 | 0.65635 |
Target: 5'- uCGCCAgccCCCCGUGGuguaACAGGaGUGu -3' miRNA: 3'- -GCGGUa--GGGGCACCuuc-UGUCCcCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 31853 | 0.66 | 0.725112 |
Target: 5'- gCGCuCGUugugcUCCCGagGGGAGACGGGGaCGa -3' miRNA: 3'- -GCG-GUA-----GGGGCa-CCUUCUGUCCCcGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 62221 | 0.66 | 0.71545 |
Target: 5'- aGCUAUCCCaacGGgcGACGaccGGGGCu -3' miRNA: 3'- gCGGUAGGGgcaCCuuCUGU---CCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 15600 | 0.66 | 0.699853 |
Target: 5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3' miRNA: 3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 131155 | 0.66 | 0.699853 |
Target: 5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3' miRNA: 3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 113457 | 0.66 | 0.686091 |
Target: 5'- uGUCcUCCCUGUGGAccuuGGGaGGGGGUu -3' miRNA: 3'- gCGGuAGGGGCACCU----UCUgUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 31057 | 0.66 | 0.676209 |
Target: 5'- aCGCCGUgaCCgGUGGc--AUGGGGGCGa -3' miRNA: 3'- -GCGGUAg-GGgCACCuucUGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 37987 | 0.66 | 0.71545 |
Target: 5'- aGuCCAcgaCCCCG-GGuacGAUGGGGGCGa -3' miRNA: 3'- gC-GGUa--GGGGCaCCuu-CUGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 26486 | 0.66 | 0.734698 |
Target: 5'- -cCCGUgUCCGagagcguccaUGGGAGAgGGGGGUGg -3' miRNA: 3'- gcGGUAgGGGC----------ACCUUCUgUCCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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