#
miRNA: 3'- -GCGGUAg-GGgCACCuucUGUCCCCGC- -5'
miRNA: 3'- gC-GGUa--GGGGCaCCuu-CUGUCCCCGC- -5'
miRNA: 3'- gCGG-UAGGg-GCa----CCUUCUGUCCCCGC- -5'
miRNA: 3'- gcGGUAgGGGC----------ACCUUCUgUCCCCGC- -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 3041 | 3' | -60.3 | NC_001493.1 | + | 31057 | 0.66 | 0.676209 |
|
Target: 5'- aCGCCGUgaCCgGUGGc--AUGGGGGCGa -3' miRNA: 3'- -GCGGUAg-GGgCACCuucUGUCCCCGC- -5' |
|||||||
| 3041 | 3' | -60.3 | NC_001493.1 | + | 37987 | 0.66 | 0.71545 |
|
Target: 5'- aGuCCAcgaCCCCG-GGuacGAUGGGGGCGa -3' miRNA: 3'- gC-GGUa--GGGGCaCCuu-CUGUCCCCGC- -5' |
|||||||
| 3041 | 3' | -60.3 | NC_001493.1 | + | 74602 | 0.66 | 0.695931 |
|
Target: 5'- uGCUaAUCCagCGauucaGGGAGGCGGGGGUGa -3' miRNA: 3'- gCGG-UAGGg-GCa----CCUUCUGUCCCCGC- -5' |
|||||||
| 3041 | 3' | -60.3 | NC_001493.1 | + | 26486 | 0.66 | 0.734698 |
|
Target: 5'- -cCCGUgUCCGagagcguccaUGGGAGAgGGGGGUGg -3' miRNA: 3'- gcGGUAgGGGC----------ACCUUCUgUCCCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home