miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3041 3' -60.3 NC_001493.1 + 12863 0.68 0.56692
Target:  5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3'
miRNA:   3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5'
3041 3' -60.3 NC_001493.1 + 128417 0.68 0.56692
Target:  5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3'
miRNA:   3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5'
3041 3' -60.3 NC_001493.1 + 14865 0.68 0.557115
Target:  5'- cCGUCAUCaucaCCGUGGGugcucucgucgAGACgcgAGGGGCc -3'
miRNA:   3'- -GCGGUAGg---GGCACCU-----------UCUG---UCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 2682 0.68 0.557115
Target:  5'- uCGuCCGUCUUCGUGaGggGugGGaGGGCc -3'
miRNA:   3'- -GC-GGUAGGGGCAC-CuuCugUC-CCCGc -5'
3041 3' -60.3 NC_001493.1 + 130419 0.68 0.557115
Target:  5'- cCGUCAUCaucaCCGUGGGugcucucgucgAGACgcgAGGGGCc -3'
miRNA:   3'- -GCGGUAGg---GGCACCU-----------UCUG---UCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 118236 0.68 0.557115
Target:  5'- uCGuCCGUCUUCGUGaGggGugGGaGGGCc -3'
miRNA:   3'- -GC-GGUAGGGGCAC-CuuCugUC-CCCGc -5'
3041 3' -60.3 NC_001493.1 + 112679 0.69 0.537659
Target:  5'- gCGCCcgagAUCCCCGauggccUGGAGGAac-GGGCGa -3'
miRNA:   3'- -GCGG----UAGGGGC------ACCUUCUgucCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 108992 0.69 0.528019
Target:  5'- uCGCCAucucUCCCCGUGcGgcGGCuguccaGGGCGu -3'
miRNA:   3'- -GCGGU----AGGGGCAC-CuuCUGuc----CCCGC- -5'
3041 3' -60.3 NC_001493.1 + 9326 0.69 0.508937
Target:  5'- gGCUAUCCuCCGcGGAGGACGuGGaGCGc -3'
miRNA:   3'- gCGGUAGG-GGCaCCUUCUGUcCC-CGC- -5'
3041 3' -60.3 NC_001493.1 + 124880 0.69 0.508937
Target:  5'- gGCUAUCCuCCGcGGAGGACGuGGaGCGc -3'
miRNA:   3'- gCGGUAGG-GGCaCCUUCUGUcCC-CGC- -5'
3041 3' -60.3 NC_001493.1 + 62015 0.7 0.490151
Target:  5'- uCGCCGuUCCCCGUGGAu-ACGuGGGUa -3'
miRNA:   3'- -GCGGU-AGGGGCACCUucUGUcCCCGc -5'
3041 3' -60.3 NC_001493.1 + 14918 0.7 0.444691
Target:  5'- gGUCcgCCCCaUGGggG-CAGGGGgGa -3'
miRNA:   3'- gCGGuaGGGGcACCuuCuGUCCCCgC- -5'
3041 3' -60.3 NC_001493.1 + 130472 0.7 0.444691
Target:  5'- gGUCcgCCCCaUGGggG-CAGGGGgGa -3'
miRNA:   3'- gCGGuaGGGGcACCuuCuGUCCCCgC- -5'
3041 3' -60.3 NC_001493.1 + 111239 0.71 0.41008
Target:  5'- gGuCCAaCCCCGUGuGAuaGGuACAGGGGCu -3'
miRNA:   3'- gC-GGUaGGGGCAC-CU--UC-UGUCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 19644 0.72 0.377194
Target:  5'- uCGCCAUaCCCGUucuGGAgAGGGGCGa -3'
miRNA:   3'- -GCGGUAgGGGCAccuUCUgUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 94701 0.72 0.369254
Target:  5'- gGUaCGUCCCgGUGGGugccACGGGGGCGa -3'
miRNA:   3'- gCG-GUAGGGgCACCUuc--UGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 101976 0.73 0.309943
Target:  5'- cCGCCAUCUCgGUgacuucGGAAGAgGGGGGUc -3'
miRNA:   3'- -GCGGUAGGGgCA------CCUUCUgUCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 124848 0.73 0.309943
Target:  5'- cCGCCAUCCCCG-GGAGcGCGGucGCGg -3'
miRNA:   3'- -GCGGUAGGGGCaCCUUcUGUCccCGC- -5'
3041 3' -60.3 NC_001493.1 + 9294 0.73 0.309943
Target:  5'- cCGCCAUCCCCG-GGAGcGCGGucGCGg -3'
miRNA:   3'- -GCGGUAGGGGCaCCUUcUGUCccCGC- -5'
3041 3' -60.3 NC_001493.1 + 133666 0.8 0.120893
Target:  5'- gGCCAUUCCCGUGGcGGACAGcGGGg- -3'
miRNA:   3'- gCGGUAGGGGCACCuUCUGUC-CCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.