miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3041 3' -60.3 NC_001493.1 + 174 0.66 0.734698
Target:  5'- gGCCccgCCCCcuuUGGcGAGACcccaaGGGGGCGu -3'
miRNA:   3'- gCGGua-GGGGc--ACC-UUCUG-----UCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 2682 0.68 0.557115
Target:  5'- uCGuCCGUCUUCGUGaGggGugGGaGGGCc -3'
miRNA:   3'- -GC-GGUAGGGGCAC-CuuCugUC-CCCGc -5'
3041 3' -60.3 NC_001493.1 + 3620 0.67 0.666292
Target:  5'- cCGCCGcCCCCGcgaauaccGGuucGcACAGGGGCGc -3'
miRNA:   3'- -GCGGUaGGGGCa-------CCuu-C-UGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 9294 0.73 0.309943
Target:  5'- cCGCCAUCCCCG-GGAGcGCGGucGCGg -3'
miRNA:   3'- -GCGGUAGGGGCaCCUUcUGUCccCGC- -5'
3041 3' -60.3 NC_001493.1 + 9326 0.69 0.508937
Target:  5'- gGCUAUCCuCCGcGGAGGACGuGGaGCGc -3'
miRNA:   3'- gCGGUAGG-GGCaCCUUCUGUcCC-CGC- -5'
3041 3' -60.3 NC_001493.1 + 12863 0.68 0.56692
Target:  5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3'
miRNA:   3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5'
3041 3' -60.3 NC_001493.1 + 14865 0.68 0.557115
Target:  5'- cCGUCAUCaucaCCGUGGGugcucucgucgAGACgcgAGGGGCc -3'
miRNA:   3'- -GCGGUAGg---GGCACCU-----------UCUG---UCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 14918 0.7 0.444691
Target:  5'- gGUCcgCCCCaUGGggG-CAGGGGgGa -3'
miRNA:   3'- gCGGuaGGGGcACCuuCuGUCCCCgC- -5'
3041 3' -60.3 NC_001493.1 + 15600 0.66 0.699853
Target:  5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3'
miRNA:   3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 18111 0.8 0.120893
Target:  5'- gGCCAUUCCCGUGGcGGACAGcGGGg- -3'
miRNA:   3'- gCGGUAGGGGCACCuUCUGUC-CCCgc -5'
3041 3' -60.3 NC_001493.1 + 18559 0.8 0.117858
Target:  5'- gGCUcgCCCCGUGGccguGGACGGGGGUu -3'
miRNA:   3'- gCGGuaGGGGCACCu---UCUGUCCCCGc -5'
3041 3' -60.3 NC_001493.1 + 19644 0.72 0.377194
Target:  5'- uCGCCAUaCCCGUucuGGAgAGGGGCGa -3'
miRNA:   3'- -GCGGUAgGGGCAccuUCUgUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 20954 1 0.004336
Target:  5'- gCGCCccAUCCCCGUGGAAGACAGGGGCGa -3'
miRNA:   3'- -GCGG--UAGGGGCACCUUCUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 24247 0.67 0.65635
Target:  5'- uCGCCAgccCCCCGUGGuguaACAGGaGUGu -3'
miRNA:   3'- -GCGGUa--GGGGCACCuuc-UGUCCcCGC- -5'
3041 3' -60.3 NC_001493.1 + 24565 0.68 0.600544
Target:  5'- gGCCGUUCCCGUGGAAcuGACcgAGGacacguuuuacaaguGGCu -3'
miRNA:   3'- gCGGUAGGGGCACCUU--CUG--UCC---------------CCGc -5'
3041 3' -60.3 NC_001493.1 + 26486 0.66 0.734698
Target:  5'- -cCCGUgUCCGagagcguccaUGGGAGAgGGGGGUGg -3'
miRNA:   3'- gcGGUAgGGGC----------ACCUUCUgUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 31057 0.66 0.676209
Target:  5'- aCGCCGUgaCCgGUGGc--AUGGGGGCGa -3'
miRNA:   3'- -GCGGUAg-GGgCACCuucUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 31853 0.66 0.725112
Target:  5'- gCGCuCGUugugcUCCCGagGGGAGACGGGGaCGa -3'
miRNA:   3'- -GCG-GUA-----GGGGCa-CCUUCUGUCCCcGC- -5'
3041 3' -60.3 NC_001493.1 + 37987 0.66 0.71545
Target:  5'- aGuCCAcgaCCCCG-GGuacGAUGGGGGCGa -3'
miRNA:   3'- gC-GGUa--GGGGCaCCuu-CUGUCCCCGC- -5'
3041 3' -60.3 NC_001493.1 + 46544 0.68 0.575781
Target:  5'- cCGCgAUCCaCGUacaucauGGAccucGACAGGGGCGa -3'
miRNA:   3'- -GCGgUAGGgGCA-------CCUu---CUGUCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.