Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3041 | 3' | -60.3 | NC_001493.1 | + | 134114 | 0.8 | 0.117858 |
Target: 5'- gGCUcgCCCCGUGGccguGGACGGGGGUu -3' miRNA: 3'- gCGGuaGGGGCACCu---UCUGUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 133666 | 0.8 | 0.120893 |
Target: 5'- gGCCAUUCCCGUGGcGGACAGcGGGg- -3' miRNA: 3'- gCGGUAGGGGCACCuUCUGUC-CCCgc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 131155 | 0.66 | 0.699853 |
Target: 5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3' miRNA: 3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 130472 | 0.7 | 0.444691 |
Target: 5'- gGUCcgCCCCaUGGggG-CAGGGGgGa -3' miRNA: 3'- gCGGuaGGGGcACCuuCuGUCCCCgC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 130419 | 0.68 | 0.557115 |
Target: 5'- cCGUCAUCaucaCCGUGGGugcucucgucgAGACgcgAGGGGCc -3' miRNA: 3'- -GCGGUAGg---GGCACCU-----------UCUG---UCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 128417 | 0.68 | 0.56692 |
Target: 5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3' miRNA: 3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 124880 | 0.69 | 0.508937 |
Target: 5'- gGCUAUCCuCCGcGGAGGACGuGGaGCGc -3' miRNA: 3'- gCGGUAGG-GGCaCCUUCUGUcCC-CGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 124848 | 0.73 | 0.309943 |
Target: 5'- cCGCCAUCCCCG-GGAGcGCGGucGCGg -3' miRNA: 3'- -GCGGUAGGGGCaCCUUcUGUCccCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 119174 | 0.67 | 0.666292 |
Target: 5'- cCGCCGcCCCCGcgaauaccGGuucGcACAGGGGCGc -3' miRNA: 3'- -GCGGUaGGGGCa-------CCuu-C-UGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 118236 | 0.68 | 0.557115 |
Target: 5'- uCGuCCGUCUUCGUGaGggGugGGaGGGCc -3' miRNA: 3'- -GC-GGUAGGGGCAC-CuuCugUC-CCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 115728 | 0.66 | 0.734698 |
Target: 5'- gGCCccgCCCCcuuUGGcGAGACcccaaGGGGGCGu -3' miRNA: 3'- gCGGua-GGGGc--ACC-UUCUG-----UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 113457 | 0.66 | 0.686091 |
Target: 5'- uGUCcUCCCUGUGGAccuuGGGaGGGGGUu -3' miRNA: 3'- gCGGuAGGGGCACCU----UCUgUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 112679 | 0.69 | 0.537659 |
Target: 5'- gCGCCcgagAUCCCCGauggccUGGAGGAac-GGGCGa -3' miRNA: 3'- -GCGG----UAGGGGC------ACCUUCUgucCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 112488 | 0.67 | 0.615474 |
Target: 5'- uGCCG-CUCCaUGGggGAgcccgugaggauaCGGGGGCGc -3' miRNA: 3'- gCGGUaGGGGcACCuuCU-------------GUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 111239 | 0.71 | 0.41008 |
Target: 5'- gGuCCAaCCCCGUGuGAuaGGuACAGGGGCu -3' miRNA: 3'- gC-GGUaGGGGCAC-CU--UC-UGUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 108992 | 0.69 | 0.528019 |
Target: 5'- uCGCCAucucUCCCCGUGcGgcGGCuguccaGGGCGu -3' miRNA: 3'- -GCGGU----AGGGGCAC-CuuCUGuc----CCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 101976 | 0.73 | 0.309943 |
Target: 5'- cCGCCAUCUCgGUgacuucGGAAGAgGGGGGUc -3' miRNA: 3'- -GCGGUAGGGgCA------CCUUCUgUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 94701 | 0.72 | 0.369254 |
Target: 5'- gGUaCGUCCCgGUGGGugccACGGGGGCGa -3' miRNA: 3'- gCG-GUAGGGgCACCUuc--UGUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 94667 | 0.67 | 0.616471 |
Target: 5'- gCGCCAgaaacggCCCUGcGGggGACAcgaGGGGa- -3' miRNA: 3'- -GCGGUa------GGGGCaCCuuCUGU---CCCCgc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 80822 | 0.66 | 0.734698 |
Target: 5'- uGuCCGUCCCCGUGacauGAGccgcGACGaacGGGGCu -3' miRNA: 3'- gC-GGUAGGGGCAC----CUU----CUGU---CCCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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