Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3041 | 3' | -60.3 | NC_001493.1 | + | 134114 | 0.8 | 0.117858 |
Target: 5'- gGCUcgCCCCGUGGccguGGACGGGGGUu -3' miRNA: 3'- gCGGuaGGGGCACCu---UCUGUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 31853 | 0.66 | 0.725112 |
Target: 5'- gCGCuCGUugugcUCCCGagGGGAGACGGGGaCGa -3' miRNA: 3'- -GCG-GUA-----GGGGCa-CCUUCUGUCCCcGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 174 | 0.66 | 0.734698 |
Target: 5'- gGCCccgCCCCcuuUGGcGAGACcccaaGGGGGCGu -3' miRNA: 3'- gCGGua-GGGGc--ACC-UUCUG-----UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 26486 | 0.66 | 0.734698 |
Target: 5'- -cCCGUgUCCGagagcguccaUGGGAGAgGGGGGUGg -3' miRNA: 3'- gcGGUAgGGGC----------ACCUUCUgUCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 9294 | 0.73 | 0.309943 |
Target: 5'- cCGCCAUCCCCG-GGAGcGCGGucGCGg -3' miRNA: 3'- -GCGGUAGGGGCaCCUUcUGUCccCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 130472 | 0.7 | 0.444691 |
Target: 5'- gGUCcgCCCCaUGGggG-CAGGGGgGa -3' miRNA: 3'- gCGGuaGGGGcACCuuCuGUCCCCgC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 62015 | 0.7 | 0.490151 |
Target: 5'- uCGCCGuUCCCCGUGGAu-ACGuGGGUa -3' miRNA: 3'- -GCGGU-AGGGGCACCUucUGUcCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 128417 | 0.68 | 0.56692 |
Target: 5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3' miRNA: 3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 24247 | 0.67 | 0.65635 |
Target: 5'- uCGCCAgccCCCCGUGGuguaACAGGaGUGu -3' miRNA: 3'- -GCGGUa--GGGGCACCuuc-UGUCCcCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 62221 | 0.66 | 0.71545 |
Target: 5'- aGCUAUCCCaacGGgcGACGaccGGGGCu -3' miRNA: 3'- gCGGUAGGGgcaCCuuCUGU---CCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 113457 | 0.66 | 0.686091 |
Target: 5'- uGUCcUCCCUGUGGAccuuGGGaGGGGGUu -3' miRNA: 3'- gCGGuAGGGGCACCU----UCUgUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 94667 | 0.67 | 0.616471 |
Target: 5'- gCGCCAgaaacggCCCUGcGGggGACAcgaGGGGa- -3' miRNA: 3'- -GCGGUa------GGGGCaCCuuCUGU---CCCCgc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 18559 | 0.8 | 0.117858 |
Target: 5'- gGCUcgCCCCGUGGccguGGACGGGGGUu -3' miRNA: 3'- gCGGuaGGGGCACCu---UCUGUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 131155 | 0.66 | 0.699853 |
Target: 5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3' miRNA: 3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 124848 | 0.73 | 0.309943 |
Target: 5'- cCGCCAUCCCCG-GGAGcGCGGucGCGg -3' miRNA: 3'- -GCGGUAGGGGCaCCUUcUGUCccCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 12863 | 0.68 | 0.56692 |
Target: 5'- gGCUc-CCCCGUGGGAGACucccGGGucGCGu -3' miRNA: 3'- gCGGuaGGGGCACCUUCUGu---CCC--CGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 15600 | 0.66 | 0.699853 |
Target: 5'- gCGCCGuccccgaagcagaacUCCCCGUccGGAAcccGCaAGGGGUGa -3' miRNA: 3'- -GCGGU---------------AGGGGCA--CCUUc--UG-UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 115728 | 0.66 | 0.734698 |
Target: 5'- gGCCccgCCCCcuuUGGcGAGACcccaaGGGGGCGu -3' miRNA: 3'- gCGGua-GGGGc--ACC-UUCUG-----UCCCCGC- -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 101976 | 0.73 | 0.309943 |
Target: 5'- cCGCCAUCUCgGUgacuucGGAAGAgGGGGGUc -3' miRNA: 3'- -GCGGUAGGGgCA------CCUUCUgUCCCCGc -5' |
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3041 | 3' | -60.3 | NC_001493.1 | + | 14918 | 0.7 | 0.444691 |
Target: 5'- gGUCcgCCCCaUGGggG-CAGGGGgGa -3' miRNA: 3'- gCGGuaGGGGcACCuuCuGUCCCCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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