miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3041 5' -52.4 NC_001493.1 + 8359 0.66 0.974097
Target:  5'- -cCAuCUCCUCGAUcgCCCUGAagcgcgguucgggccGGGGg -3'
miRNA:   3'- auGU-GAGGAGCUGaaGGGAUUa--------------CCCC- -5'
3041 5' -52.4 NC_001493.1 + 123913 0.66 0.974097
Target:  5'- -cCAuCUCCUCGAUcgCCCUGAagcgcgguucgggccGGGGg -3'
miRNA:   3'- auGU-GAGGAGCUGaaGGGAUUa--------------CCCC- -5'
3041 5' -52.4 NC_001493.1 + 13272 0.66 0.970976
Target:  5'- gGgGCUCCagucUCGGgaUCUCUcGUGGGGa -3'
miRNA:   3'- aUgUGAGG----AGCUgaAGGGAuUACCCC- -5'
3041 5' -52.4 NC_001493.1 + 128826 0.66 0.970976
Target:  5'- gGgGCUCCagucUCGGgaUCUCUcGUGGGGa -3'
miRNA:   3'- aUgUGAGG----AGCUgaAGGGAuUACCCC- -5'
3041 5' -52.4 NC_001493.1 + 35228 0.66 0.967914
Target:  5'- gACACUuguuUCUC-ACUUCCCUcuGUGGGa -3'
miRNA:   3'- aUGUGA----GGAGcUGAAGGGAu-UACCCc -5'
3041 5' -52.4 NC_001493.1 + 87781 0.68 0.934952
Target:  5'- --gGCUCCUCGuACgcCCCg---GGGGg -3'
miRNA:   3'- augUGAGGAGC-UGaaGGGauuaCCCC- -5'
3041 5' -52.4 NC_001493.1 + 119208 0.7 0.878714
Target:  5'- cGCGCUCCUCGggcgACUcaacggggaUCCCgaacgGAaGGGGg -3'
miRNA:   3'- aUGUGAGGAGC----UGA---------AGGGa----UUaCCCC- -5'
3041 5' -52.4 NC_001493.1 + 3654 0.7 0.878714
Target:  5'- cGCGCUCCUCGggcgACUcaacggggaUCCCgaacgGAaGGGGg -3'
miRNA:   3'- aUGUGAGGAGC----UGA---------AGGGa----UUaCCCC- -5'
3041 5' -52.4 NC_001493.1 + 83970 0.7 0.863539
Target:  5'- --aACUUCUCGACggCCCU-GUGGaGGa -3'
miRNA:   3'- augUGAGGAGCUGaaGGGAuUACC-CC- -5'
3041 5' -52.4 NC_001493.1 + 20997 1.1 0.004743
Target:  5'- aUACACUCCUCGACUUCCCUAAUGGGGa -3'
miRNA:   3'- -AUGUGAGGAGCUGAAGGGAUUACCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.