miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30410 3' -55.7 NC_006548.1 + 2008 0.66 0.566375
Target:  5'- cGggGUaUGCCGCGGGCaagCgcgcGCGGCUgCAc -3'
miRNA:   3'- -CuuUA-GUGGCGCCCGa--Ga---CGUCGA-GU- -5'
30410 3' -55.7 NC_006548.1 + 17616 0.66 0.510917
Target:  5'- --cAUgGCCGagGGGCUggagGCAGCUCAc -3'
miRNA:   3'- cuuUAgUGGCg-CCCGAga--CGUCGAGU- -5'
30410 3' -55.7 NC_006548.1 + 7741 0.67 0.500086
Target:  5'- gGAGGUCGCgcagagccuUGCGcaGCUCgcgGCAGCUCAu -3'
miRNA:   3'- -CUUUAGUG---------GCGCc-CGAGa--CGUCGAGU- -5'
30410 3' -55.7 NC_006548.1 + 12139 0.67 0.500086
Target:  5'- uGAGAUC-CCGCGGGC-CgccgaGCAGUaUCGc -3'
miRNA:   3'- -CUUUAGuGGCGCCCGaGa----CGUCG-AGU- -5'
30410 3' -55.7 NC_006548.1 + 19147 0.67 0.468232
Target:  5'- gGAGAUCcgaGCGGGCuUCUGCAGgaUAu -3'
miRNA:   3'- -CUUUAGuggCGCCCG-AGACGUCgaGU- -5'
30410 3' -55.7 NC_006548.1 + 13383 0.7 0.33541
Target:  5'- cGGAAUCGgCGCGcGCUCcUGCGGCgggCAa -3'
miRNA:   3'- -CUUUAGUgGCGCcCGAG-ACGUCGa--GU- -5'
30410 3' -55.7 NC_006548.1 + 5465 0.7 0.327041
Target:  5'- -cGAUCGCCGcCGGGCUCagGUcgaccGCUCGa -3'
miRNA:   3'- cuUUAGUGGC-GCCCGAGa-CGu----CGAGU- -5'
30410 3' -55.7 NC_006548.1 + 8004 0.7 0.30287
Target:  5'- uGAAGUCGCCGUgGGGCUCaUGCucuUUCAg -3'
miRNA:   3'- -CUUUAGUGGCG-CCCGAG-ACGuc-GAGU- -5'
30410 3' -55.7 NC_006548.1 + 13568 0.71 0.280097
Target:  5'- ----cCugCGCGGGCggcggcaagCUGCuGCUCAa -3'
miRNA:   3'- cuuuaGugGCGCCCGa--------GACGuCGAGU- -5'
30410 3' -55.7 NC_006548.1 + 23619 0.71 0.280097
Target:  5'- uGAGAUgGCUGaCGGGCUCUGC-GCa-- -3'
miRNA:   3'- -CUUUAgUGGC-GCCCGAGACGuCGagu -5'
30410 3' -55.7 NC_006548.1 + 8347 0.71 0.272815
Target:  5'- cGAAAUCaACCGcCGGGUcgCUGCcGGCUCc -3'
miRNA:   3'- -CUUUAG-UGGC-GCCCGa-GACG-UCGAGu -5'
30410 3' -55.7 NC_006548.1 + 24615 0.72 0.245201
Target:  5'- -cGGUCACCGUGucGGCgg-GCAGCUCGa -3'
miRNA:   3'- cuUUAGUGGCGC--CCGagaCGUCGAGU- -5'
30410 3' -55.7 NC_006548.1 + 3382 1.08 0.000493
Target:  5'- cGAAAUCACCGCGGGCUCUGCAGCUCAu -3'
miRNA:   3'- -CUUUAGUGGCGCCCGAGACGUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.