miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30410 5' -55.8 NC_006548.1 + 3343 1.04 0.000854
Target:  5'- gAUCGAGCUGGUGAUCACCUGCAGCAAc -3'
miRNA:   3'- -UAGCUCGACCACUAGUGGACGUCGUU- -5'
30410 5' -55.8 NC_006548.1 + 13515 0.73 0.168183
Target:  5'- gGUCGAGCUGGaacuguggcaguUGAUCACuCUGCuGCu- -3'
miRNA:   3'- -UAGCUCGACC------------ACUAGUG-GACGuCGuu -5'
30410 5' -55.8 NC_006548.1 + 22020 0.73 0.183279
Target:  5'- uAUCcAGCgcaucGGUGAUCACCgGCAGCGGg -3'
miRNA:   3'- -UAGcUCGa----CCACUAGUGGaCGUCGUU- -5'
30410 5' -55.8 NC_006548.1 + 25340 0.73 0.188036
Target:  5'- uGUCGAGCUGGaaugGAUCgagaaggGCCUGCGcGCAc -3'
miRNA:   3'- -UAGCUCGACCa---CUAG-------UGGACGU-CGUu -5'
30410 5' -55.8 NC_006548.1 + 21885 0.68 0.359925
Target:  5'- gAUCGAGCaggaucagguUGGUGGUCugCUcgGUGGCAu -3'
miRNA:   3'- -UAGCUCG----------ACCACUAGugGA--CGUCGUu -5'
30410 5' -55.8 NC_006548.1 + 2152 0.66 0.478976
Target:  5'- -aCGGGCuaccuUGGUGGacCGCUUGCAGCGu -3'
miRNA:   3'- uaGCUCG-----ACCACUa-GUGGACGUCGUu -5'
30410 5' -55.8 NC_006548.1 + 20726 0.66 0.48977
Target:  5'- cGUCGAGCUGGcguugGcgCuCCUGgAGCGc -3'
miRNA:   3'- -UAGCUCGACCa----CuaGuGGACgUCGUu -5'
30410 5' -55.8 NC_006548.1 + 22744 0.66 0.500677
Target:  5'- -aCGAGCUGcucGAUCGCCagcgugGCGGCGu -3'
miRNA:   3'- uaGCUCGACca-CUAGUGGa-----CGUCGUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.