miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30411 3' -54.3 NC_006548.1 + 2078 0.66 0.671597
Target:  5'- uUG-UCGUCgacgcccgcgaacugGUCgACCUugGCGUACACg -3'
miRNA:   3'- uACuGGCAG---------------UAG-UGGGugCGCAUGUG- -5'
30411 3' -54.3 NC_006548.1 + 32880 0.66 0.66704
Target:  5'- -cGACCGUUugugCGCCgGcCGCGgugACGCu -3'
miRNA:   3'- uaCUGGCAGua--GUGGgU-GCGCa--UGUG- -5'
30411 3' -54.3 NC_006548.1 + 7630 0.66 0.66704
Target:  5'- -cGGCCGUCAUgGuuuccaCCugGCG-GCGCg -3'
miRNA:   3'- uaCUGGCAGUAgUg-----GGugCGCaUGUG- -5'
30411 3' -54.3 NC_006548.1 + 16574 0.66 0.632741
Target:  5'- gGUGACgCgGUCccaGCCCACGCGcUGCAg -3'
miRNA:   3'- -UACUG-G-CAGuagUGGGUGCGC-AUGUg -5'
30411 3' -54.3 NC_006548.1 + 36674 0.66 0.631595
Target:  5'- --cACCGUaucgacgCAUC-CCCGCGCGaGCACc -3'
miRNA:   3'- uacUGGCA-------GUAGuGGGUGCGCaUGUG- -5'
30411 3' -54.3 NC_006548.1 + 7940 0.67 0.575699
Target:  5'- --cGCCGccugCAUCAUCCGgCGCGcUGCGCg -3'
miRNA:   3'- uacUGGCa---GUAGUGGGU-GCGC-AUGUG- -5'
30411 3' -54.3 NC_006548.1 + 16039 0.67 0.575699
Target:  5'- --aGCCGUCGUCugCUugGUGaccucGCGCa -3'
miRNA:   3'- uacUGGCAGUAGugGGugCGCa----UGUG- -5'
30411 3' -54.3 NC_006548.1 + 27508 0.67 0.564402
Target:  5'- uUGGCC-UCGUUACCCACuccaGUGaGCACg -3'
miRNA:   3'- uACUGGcAGUAGUGGGUG----CGCaUGUG- -5'
30411 3' -54.3 NC_006548.1 + 6441 0.67 0.564402
Target:  5'- -cGACCGagccCGUaACCCgcgccgcgccugGCGCGUGCACg -3'
miRNA:   3'- uaCUGGCa---GUAgUGGG------------UGCGCAUGUG- -5'
30411 3' -54.3 NC_006548.1 + 14526 0.68 0.530903
Target:  5'- --cGCCGUCAgCGCCuCGCuGCGUGCGu -3'
miRNA:   3'- uacUGGCAGUaGUGG-GUG-CGCAUGUg -5'
30411 3' -54.3 NC_006548.1 + 3566 0.68 0.524286
Target:  5'- gGUGGCCGUUcgaGUCAUCCugGUGgaaacccagccuggACGCu -3'
miRNA:   3'- -UACUGGCAG---UAGUGGGugCGCa-------------UGUG- -5'
30411 3' -54.3 NC_006548.1 + 4315 0.68 0.519893
Target:  5'- gAUG-CCGUCAacaacgcCACCCGCGCccUGCGCa -3'
miRNA:   3'- -UACuGGCAGUa------GUGGGUGCGc-AUGUG- -5'
30411 3' -54.3 NC_006548.1 + 7364 0.74 0.218724
Target:  5'- cGUGucuGCCGUCAUCACCCAgCGCcugGUugACc -3'
miRNA:   3'- -UAC---UGGCAGUAGUGGGU-GCG---CAugUG- -5'
30411 3' -54.3 NC_006548.1 + 4080 1.07 0.001063
Target:  5'- aAUGACCGUCAUCACCCACGCGUACACc -3'
miRNA:   3'- -UACUGGCAGUAGUGGGUGCGCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.