Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 5350 | 0.66 | 0.665689 |
Target: 5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3' miRNA: 3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1432 | 0.66 | 0.686927 |
Target: 5'- uCCUGGGccuccUGCCGcuuuacgUCAGCAucGCGCCgaggcggaucGCCg -3' miRNA: 3'- -GGACCU-----ACGGC-------AGUUGU--UGCGG----------UGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 18062 | 0.66 | 0.665689 |
Target: 5'- uUCUGGAUGUacaaccaCAGCGAUGCCGucgaacaucCCCg -3' miRNA: 3'- -GGACCUACGgca----GUUGUUGCGGU---------GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 16494 | 0.67 | 0.651085 |
Target: 5'- aCCUGGAgcagcaGCUG-CAGCGcgugggcugggaccGCGUCACCa -3' miRNA: 3'- -GGACCUa-----CGGCaGUUGU--------------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 30339 | 0.67 | 0.631944 |
Target: 5'- cCCUGGccuggGCgG-CAcCGACGCCAUCUa -3' miRNA: 3'- -GGACCua---CGgCaGUuGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 16848 | 0.67 | 0.616179 |
Target: 5'- uCCUGGAcaaguucgguaUGCCcacggcgGUCGGCcgcuaugacgacaaGAcCGCCACCCc -3' miRNA: 3'- -GGACCU-----------ACGG-------CAGUUG--------------UU-GCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1124 | 0.68 | 0.586997 |
Target: 5'- gCCUGGccgucUGCgCGgcCAGCAACGCCugUg -3' miRNA: 3'- -GGACCu----ACG-GCa-GUUGUUGCGGugGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 27301 | 0.68 | 0.585879 |
Target: 5'- gCUGGGUGCCaUCGAuccgacuCAGCGCUcucucGCUCg -3' miRNA: 3'- gGACCUACGGcAGUU-------GUUGCGG-----UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 20861 | 0.68 | 0.575835 |
Target: 5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3' miRNA: 3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 28535 | 0.69 | 0.531758 |
Target: 5'- uCCUGcucGgcGCCGgcCAggucGCGGCGCUACCCg -3' miRNA: 3'- -GGAC---CuaCGGCa-GU----UGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4529 | 0.76 | 0.191264 |
Target: 5'- gCCUGGAUGCCGcuugcguccaccaccUCgGACAACuGCUugCCa -3' miRNA: 3'- -GGACCUACGGC---------------AG-UUGUUG-CGGugGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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