Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 8861 | 0.66 | 0.703557 |
Target: 5'- aCCUGGcgGCCGcccacggaaagcuccUCAucgacaucccgACuggucgcacGACGUCGCCCa -3' miRNA: 3'- -GGACCuaCGGC---------------AGU-----------UG---------UUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21666 | 0.66 | 0.710166 |
Target: 5'- cCCUGGucgGCCG-CAaguccaagccgaACGaaguagaguucaGCGCCACCg -3' miRNA: 3'- -GGACCua-CGGCaGU------------UGU------------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4477 | 0.66 | 0.710166 |
Target: 5'- aUCUGGcgGUGCaUGUCGGCGAa-CCGCUCg -3' miRNA: 3'- -GGACC--UACG-GCAGUUGUUgcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 18062 | 0.66 | 0.665689 |
Target: 5'- uUCUGGAUGUacaaccaCAGCGAUGCCGucgaacaucCCCg -3' miRNA: 3'- -GGACCUACGgca----GUUGUUGCGGU---------GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 5350 | 0.66 | 0.665689 |
Target: 5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3' miRNA: 3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1432 | 0.66 | 0.686927 |
Target: 5'- uCCUGGGccuccUGCCGcuuuacgUCAGCAucGCGCCgaggcggaucGCCg -3' miRNA: 3'- -GGACCU-----ACGGC-------AGUUGU--UGCGG----------UGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1047 | 0.66 | 0.68804 |
Target: 5'- gCCaUGGAacaccuccaUGCCauGUCGACGAC-CCAgCCg -3' miRNA: 3'- -GG-ACCU---------ACGG--CAGUUGUUGcGGUgGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 31649 | 0.66 | 0.68804 |
Target: 5'- gCCUGGAUgGCC-UgGAUGGCGgCCccucGCCCg -3' miRNA: 3'- -GGACCUA-CGGcAgUUGUUGC-GG----UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 35506 | 0.66 | 0.68804 |
Target: 5'- aCUGGG-GCCGUggCAAgGAuCGCgGCCUg -3' miRNA: 3'- gGACCUaCGGCA--GUUgUU-GCGgUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 544 | 0.66 | 0.68804 |
Target: 5'- aUUGGAcgcUGCCGccgccauccuuUCGGCAGCuguuccaggccgGCCGCCUg -3' miRNA: 3'- gGACCU---ACGGC-----------AGUUGUUG------------CGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 26407 | 0.66 | 0.710166 |
Target: 5'- gCCUGGAagaaacaCUGUCGGCGGC-UCACCUg -3' miRNA: 3'- -GGACCUac-----GGCAGUUGUUGcGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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