Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30416 | 3' | -60 | NC_006548.1 | + | 5546 | 1.13 | 0.000138 |
Target: 5'- aGGCCGACCUGGCUCGAGCGGUCGACCu -3' miRNA: 3'- -CCGGCUGGACCGAGCUCGCCAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 5482 | 0.82 | 0.033544 |
Target: 5'- aGGUCGACC--GCUCGAGCcaGGUCGGCCu -3' miRNA: 3'- -CCGGCUGGacCGAGCUCG--CCAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 8459 | 0.82 | 0.029039 |
Target: 5'- aGGCCGGCCUGGC-CGAGCGuagagaagaCGGCCg -3' miRNA: 3'- -CCGGCUGGACCGaGCUCGCca-------GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 36860 | 0.82 | 0.030764 |
Target: 5'- aGGCCGcGCCUGGCgcugguucauUCGcAGCGaGUCGACCg -3' miRNA: 3'- -CCGGC-UGGACCG----------AGC-UCGC-CAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 9832 | 0.77 | 0.074381 |
Target: 5'- uGCCGGCCUGGCggaagCGuuGCuucaccuGGUCGGCCg -3' miRNA: 3'- cCGGCUGGACCGa----GCu-CG-------CCAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 33384 | 0.76 | 0.090784 |
Target: 5'- cGCCGACCUGGUgcuggUCGAcacaGUGGcugCGACCa -3' miRNA: 3'- cCGGCUGGACCG-----AGCU----CGCCa--GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 21346 | 0.74 | 0.126535 |
Target: 5'- cGGCCGAcgcCCaGGggCGAGCGGUUG-CCg -3' miRNA: 3'- -CCGGCU---GGaCCgaGCUCGCCAGCuGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 33141 | 0.74 | 0.113364 |
Target: 5'- gGGCUGGCCgGuGCUCGGGCaG-CGGCCc -3' miRNA: 3'- -CCGGCUGGaC-CGAGCUCGcCaGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 14378 | 0.72 | 0.173097 |
Target: 5'- cGGCuuCGGCCUGGCUCGGGaacugcgccugcaGGUccgCGAUCa -3' miRNA: 3'- -CCG--GCUGGACCGAGCUCg------------CCA---GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 16838 | 0.72 | 0.161485 |
Target: 5'- uGGCUGAucuuCCUGGacaaguUCGguaugcccacGGCGGUCGGCCg -3' miRNA: 3'- -CCGGCU----GGACCg-----AGC----------UCGCCAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 31374 | 0.71 | 0.194451 |
Target: 5'- gGGaCCGACCgucgcacaGCU-GAGCGGUgGGCCg -3' miRNA: 3'- -CC-GGCUGGac------CGAgCUCGCCAgCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 23054 | 0.71 | 0.204898 |
Target: 5'- aGGCUGcucaguugcuGCCguugGGUgcaaUCGAGCGGgagCGGCCg -3' miRNA: 3'- -CCGGC----------UGGa---CCG----AGCUCGCCa--GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 17837 | 0.71 | 0.212497 |
Target: 5'- cGCCGACCUGGU---GGCGGaucugcaagccauuaUCGAUCa -3' miRNA: 3'- cCGGCUGGACCGagcUCGCC---------------AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 12543 | 0.7 | 0.21977 |
Target: 5'- aGCUGGCCUGGUucgauuccgUCGAGCGcuucaacgccgggcGcUCGGCCg -3' miRNA: 3'- cCGGCUGGACCG---------AGCUCGC--------------C-AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 1268 | 0.7 | 0.245348 |
Target: 5'- cGGCaGGCUUGGCuUUGAGCGucgaauucUCGGCCa -3' miRNA: 3'- -CCGgCUGGACCG-AGCUCGCc-------AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 12167 | 0.7 | 0.215828 |
Target: 5'- cGCCgcGugCUGGUUCGAGCGG-CGcauGCUg -3' miRNA: 3'- cCGG--CugGACCGAGCUCGCCaGC---UGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 2866 | 0.69 | 0.264622 |
Target: 5'- uGGCCG-CCUGcaggcGCUCGucgaaGGCGauguuGUCGGCCa -3' miRNA: 3'- -CCGGCuGGAC-----CGAGC-----UCGC-----CAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 17126 | 0.69 | 0.278142 |
Target: 5'- cGCC-ACCUGGC-CGAGCc--CGACCu -3' miRNA: 3'- cCGGcUGGACCGaGCUCGccaGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 629 | 0.68 | 0.321217 |
Target: 5'- cGGCCGGCCUGGaacagcugcCGAaaggaugGCGG-CGGCa -3' miRNA: 3'- -CCGGCUGGACCga-------GCU-------CGCCaGCUGg -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 27334 | 0.68 | 0.321989 |
Target: 5'- cGCUcGCCUGGC-CGAGCaGGagcggcagUUGACCg -3' miRNA: 3'- cCGGcUGGACCGaGCUCG-CC--------AGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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