miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30416 3' -60 NC_006548.1 + 38259 0.66 0.415165
Target:  5'- aGCUGACC--GCUCugucuGAGCGGgUGGCCg -3'
miRNA:   3'- cCGGCUGGacCGAG-----CUCGCCaGCUGG- -5'
30416 3' -60 NC_006548.1 + 36860 0.82 0.030764
Target:  5'- aGGCCGcGCCUGGCgcugguucauUCGcAGCGaGUCGACCg -3'
miRNA:   3'- -CCGGC-UGGACCG----------AGC-UCGC-CAGCUGG- -5'
30416 3' -60 NC_006548.1 + 36639 0.66 0.415165
Target:  5'- uGCCGGCCgcGGCgUUGAuCGcGUCGACg -3'
miRNA:   3'- cCGGCUGGa-CCG-AGCUcGC-CAGCUGg -5'
30416 3' -60 NC_006548.1 + 33384 0.76 0.090784
Target:  5'- cGCCGACCUGGUgcuggUCGAcacaGUGGcugCGACCa -3'
miRNA:   3'- cCGGCUGGACCG-----AGCU----CGCCa--GCUGG- -5'
30416 3' -60 NC_006548.1 + 33141 0.74 0.113364
Target:  5'- gGGCUGGCCgGuGCUCGGGCaG-CGGCCc -3'
miRNA:   3'- -CCGGCUGGaC-CGAGCUCGcCaGCUGG- -5'
30416 3' -60 NC_006548.1 + 32592 0.67 0.344963
Target:  5'- gGGCUGA--UGGCgugcaggagucacUgGAGUGGUUGACCg -3'
miRNA:   3'- -CCGGCUggACCG-------------AgCUCGCCAGCUGG- -5'
30416 3' -60 NC_006548.1 + 31374 0.71 0.194451
Target:  5'- gGGaCCGACCgucgcacaGCU-GAGCGGUgGGCCg -3'
miRNA:   3'- -CC-GGCUGGac------CGAgCUCGCCAgCUGG- -5'
30416 3' -60 NC_006548.1 + 28958 0.66 0.397028
Target:  5'- cGCCGGCCgc-CUCGA-CGGuUUGGCCg -3'
miRNA:   3'- cCGGCUGGaccGAGCUcGCC-AGCUGG- -5'
30416 3' -60 NC_006548.1 + 27334 0.68 0.321989
Target:  5'- cGCUcGCCUGGC-CGAGCaGGagcggcagUUGACCg -3'
miRNA:   3'- cCGGcUGGACCGaGCUCG-CC--------AGCUGG- -5'
30416 3' -60 NC_006548.1 + 27193 0.66 0.424422
Target:  5'- uGCCGAgC-GuGCUCGcguccagcaGGCGG-CGACCg -3'
miRNA:   3'- cCGGCUgGaC-CGAGC---------UCGCCaGCUGG- -5'
30416 3' -60 NC_006548.1 + 24017 0.67 0.361481
Target:  5'- cGCCuGCCaGGC-CGGGCGGUguccagcCGAUCa -3'
miRNA:   3'- cCGGcUGGaCCGaGCUCGCCA-------GCUGG- -5'
30416 3' -60 NC_006548.1 + 23850 0.67 0.379409
Target:  5'- uGGCCGGCg-GGCUUGGGUGagagaGUCuccugGGCCa -3'
miRNA:   3'- -CCGGCUGgaCCGAGCUCGC-----CAG-----CUGG- -5'
30416 3' -60 NC_006548.1 + 23131 0.68 0.29149
Target:  5'- uGGCCGAacguCCUGGUgccgaggaguugUCGcaAGCGGcuacaccUCGGCCu -3'
miRNA:   3'- -CCGGCU----GGACCG------------AGC--UCGCC-------AGCUGG- -5'
30416 3' -60 NC_006548.1 + 23054 0.71 0.204898
Target:  5'- aGGCUGcucaguugcuGCCguugGGUgcaaUCGAGCGGgagCGGCCg -3'
miRNA:   3'- -CCGGC----------UGGa---CCG----AGCUCGCCa--GCUGG- -5'
30416 3' -60 NC_006548.1 + 22312 0.66 0.397028
Target:  5'- aGGCCGAaggUGGUgccguugCGGGUG-UCGGCCa -3'
miRNA:   3'- -CCGGCUgg-ACCGa------GCUCGCcAGCUGG- -5'
30416 3' -60 NC_006548.1 + 21715 0.66 0.397028
Target:  5'- cGGCCGACCagGGUUucCGGGaCGGUgaaGCCc -3'
miRNA:   3'- -CCGGCUGGa-CCGA--GCUC-GCCAgc-UGG- -5'
30416 3' -60 NC_006548.1 + 21346 0.74 0.126535
Target:  5'- cGGCCGAcgcCCaGGggCGAGCGGUUG-CCg -3'
miRNA:   3'- -CCGGCU---GGaCCgaGCUCGCCAGCuGG- -5'
30416 3' -60 NC_006548.1 + 21291 0.67 0.362322
Target:  5'- -uCCGGCCUGGCgccggUCGAGUacGG-CGGCa -3'
miRNA:   3'- ccGGCUGGACCG-----AGCUCG--CCaGCUGg -5'
30416 3' -60 NC_006548.1 + 21149 0.66 0.42349
Target:  5'- uGGCCuACUUGGCUCccuugguGAuGUGGguaaCGGCCu -3'
miRNA:   3'- -CCGGcUGGACCGAG-------CU-CGCCa---GCUGG- -5'
30416 3' -60 NC_006548.1 + 20768 0.66 0.424422
Target:  5'- gGGCC-ACCUGuGCUUc-GCGGgUGGCCa -3'
miRNA:   3'- -CCGGcUGGAC-CGAGcuCGCCaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.