Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30416 | 3' | -60 | NC_006548.1 | + | 629 | 0.68 | 0.321217 |
Target: 5'- cGGCCGGCCUGGaacagcugcCGAaaggaugGCGG-CGGCa -3' miRNA: 3'- -CCGGCUGGACCga-------GCU-------CGCCaGCUGg -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 27334 | 0.68 | 0.321989 |
Target: 5'- cGCUcGCCUGGC-CGAGCaGGagcggcagUUGACCg -3' miRNA: 3'- cCGGcUGGACCGaGCUCG-CC--------AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 4844 | 0.68 | 0.330567 |
Target: 5'- uGGCUGACCUucaaGGCUCGgugcaauugcgcgaAGCGuGccuccgggcucgauuUCGGCCg -3' miRNA: 3'- -CCGGCUGGA----CCGAGC--------------UCGC-C---------------AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 16526 | 0.67 | 0.337709 |
Target: 5'- uGCCGcaGCCUGGUcgaUCGGGCGaUC-ACCg -3' miRNA: 3'- cCGGC--UGGACCG---AGCUCGCcAGcUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 32592 | 0.67 | 0.344963 |
Target: 5'- gGGCUGA--UGGCgugcaggagucacUgGAGUGGUUGACCg -3' miRNA: 3'- -CCGGCUggACCG-------------AgCUCGCCAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 7570 | 0.67 | 0.345776 |
Target: 5'- uGGCCGAgCaGGC-CGAGgagcaaGGUgcCGACCa -3' miRNA: 3'- -CCGGCUgGaCCGaGCUCg-----CCA--GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 24017 | 0.67 | 0.361481 |
Target: 5'- cGCCuGCCaGGC-CGGGCGGUguccagcCGAUCa -3' miRNA: 3'- cCGGcUGGaCCGaGCUCGCCA-------GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 19948 | 0.67 | 0.362322 |
Target: 5'- cGGCCGGCggggaggaUUGGCagaGuGGCGGUUGGCUu -3' miRNA: 3'- -CCGGCUG--------GACCGag-C-UCGCCAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 15802 | 0.67 | 0.362322 |
Target: 5'- -aCCGGCCUGGgUaucggcUGGGCGGaCGACg -3' miRNA: 3'- ccGGCUGGACCgA------GCUCGCCaGCUGg -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 21291 | 0.67 | 0.362322 |
Target: 5'- -uCCGGCCUGGCgccggUCGAGUacGG-CGGCa -3' miRNA: 3'- ccGGCUGGACCG-----AGCUCG--CCaGCUGg -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 23850 | 0.67 | 0.379409 |
Target: 5'- uGGCCGGCg-GGCUUGGGUGagagaGUCuccugGGCCa -3' miRNA: 3'- -CCGGCUGgaCCGAGCUCGC-----CAG-----CUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 4619 | 0.67 | 0.379409 |
Target: 5'- cGGCCGGgCUGGCaagcaguugucCGAgGUGGUgGACg -3' miRNA: 3'- -CCGGCUgGACCGa----------GCU-CGCCAgCUGg -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 17441 | 0.67 | 0.379409 |
Target: 5'- cGCCGugGCCUcGGCcUGGGUGGacucaacuUCGACCc -3' miRNA: 3'- cCGGC--UGGA-CCGaGCUCGCC--------AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 22312 | 0.66 | 0.397028 |
Target: 5'- aGGCCGAaggUGGUgccguugCGGGUG-UCGGCCa -3' miRNA: 3'- -CCGGCUgg-ACCGa------GCUCGCcAGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 21715 | 0.66 | 0.397028 |
Target: 5'- cGGCCGACCagGGUUucCGGGaCGGUgaaGCCc -3' miRNA: 3'- -CCGGCUGGa-CCGA--GCUC-GCCAgc-UGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 28958 | 0.66 | 0.397028 |
Target: 5'- cGCCGGCCgc-CUCGA-CGGuUUGGCCg -3' miRNA: 3'- cCGGCUGGaccGAGCUcGCC-AGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 36639 | 0.66 | 0.415165 |
Target: 5'- uGCCGGCCgcGGCgUUGAuCGcGUCGACg -3' miRNA: 3'- cCGGCUGGa-CCG-AGCUcGC-CAGCUGg -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 38259 | 0.66 | 0.415165 |
Target: 5'- aGCUGACC--GCUCugucuGAGCGGgUGGCCg -3' miRNA: 3'- cCGGCUGGacCGAG-----CUCGCCaGCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 21149 | 0.66 | 0.42349 |
Target: 5'- uGGCCuACUUGGCUCccuugguGAuGUGGguaaCGGCCu -3' miRNA: 3'- -CCGGcUGGACCGAG-------CU-CGCCa---GCUGG- -5' |
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30416 | 3' | -60 | NC_006548.1 | + | 20768 | 0.66 | 0.424422 |
Target: 5'- gGGCC-ACCUGuGCUUc-GCGGgUGGCCa -3' miRNA: 3'- -CCGGcUGGAC-CGAGcuCGCCaGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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