miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30416 5' -49.7 NC_006548.1 + 32662 0.66 0.906891
Target:  5'- aCGGCGAUCGCUgCGcCUG-UCAc--- -3'
miRNA:   3'- cGCCGCUAGCGA-GUuGACuAGUuagu -5'
30416 5' -49.7 NC_006548.1 + 26683 0.66 0.892159
Target:  5'- cGgGGUGGUCGUUCAGgCUGAUgAu--- -3'
miRNA:   3'- -CgCCGCUAGCGAGUU-GACUAgUuagu -5'
30416 5' -49.7 NC_006548.1 + 26347 0.66 0.899678
Target:  5'- cGCGGCG--CGCUgGAU--GUCGGUCAg -3'
miRNA:   3'- -CGCCGCuaGCGAgUUGacUAGUUAGU- -5'
30416 5' -49.7 NC_006548.1 + 16321 0.66 0.899678
Target:  5'- cGCGGCcGUCGC-C-ACUGGUggCGAUCu -3'
miRNA:   3'- -CGCCGcUAGCGaGuUGACUA--GUUAGu -5'
30416 5' -49.7 NC_006548.1 + 20821 0.66 0.899678
Target:  5'- cCGGUGAUCGagcuGCUGGUgAGUCu -3'
miRNA:   3'- cGCCGCUAGCgaguUGACUAgUUAGu -5'
30416 5' -49.7 NC_006548.1 + 31446 0.66 0.906183
Target:  5'- aCGGCccacCGCUCAGCUGugcgacgGUCGGUCc -3'
miRNA:   3'- cGCCGcua-GCGAGUUGAC-------UAGUUAGu -5'
30416 5' -49.7 NC_006548.1 + 1155 0.67 0.867826
Target:  5'- uGCGGCGAUCauccgGCUCAACcaGAccuUCGGguUCAc -3'
miRNA:   3'- -CGCCGCUAG-----CGAGUUGa-CU---AGUU--AGU- -5'
30416 5' -49.7 NC_006548.1 + 35108 0.67 0.876227
Target:  5'- gGCaGGUGAUCGCacugCAuggaaagGAUCGGUCAa -3'
miRNA:   3'- -CG-CCGCUAGCGa---GUuga----CUAGUUAGU- -5'
30416 5' -49.7 NC_006548.1 + 21586 0.67 0.859147
Target:  5'- aUGGCGAUCGCcgUCAGuucggGAUCGAUgGg -3'
miRNA:   3'- cGCCGCUAGCG--AGUUga---CUAGUUAgU- -5'
30416 5' -49.7 NC_006548.1 + 22354 0.67 0.87122
Target:  5'- uCGGCGAUCGaaccggacacgcgaUCAccccACUGggCGGUCAg -3'
miRNA:   3'- cGCCGCUAGCg-------------AGU----UGACuaGUUAGU- -5'
30416 5' -49.7 NC_006548.1 + 35374 0.68 0.791415
Target:  5'- gGUGGCGAcgagCGCUCAACgGAUgGGa-- -3'
miRNA:   3'- -CGCCGCUa---GCGAGUUGaCUAgUUagu -5'
30416 5' -49.7 NC_006548.1 + 24790 0.68 0.791415
Target:  5'- cCGGUGA-CGUUCAGCaGuUCGAUCAg -3'
miRNA:   3'- cGCCGCUaGCGAGUUGaCuAGUUAGU- -5'
30416 5' -49.7 NC_006548.1 + 4689 0.68 0.8119
Target:  5'- aGCGGaucgaGAUCGUagAGCUGGagUCGAUCc -3'
miRNA:   3'- -CGCCg----CUAGCGagUUGACU--AGUUAGu -5'
30416 5' -49.7 NC_006548.1 + 4200 0.69 0.759303
Target:  5'- cCGGCGAUCGagcacCGACgucUGAUCAAUUg -3'
miRNA:   3'- cGCCGCUAGCga---GUUG---ACUAGUUAGu -5'
30416 5' -49.7 NC_006548.1 + 37728 0.7 0.679836
Target:  5'- cCGGCGAccggcgucuacUCGCUguucugcgCAGCUGAUCuGUCGu -3'
miRNA:   3'- cGCCGCU-----------AGCGA--------GUUGACUAGuUAGU- -5'
30416 5' -49.7 NC_006548.1 + 36632 0.71 0.644728
Target:  5'- cGCGGCguuGAUCGCgUCGACgcgGAagaucucgucaUCGAUCAu -3'
miRNA:   3'- -CGCCG---CUAGCG-AGUUGa--CU-----------AGUUAGU- -5'
30416 5' -49.7 NC_006548.1 + 17454 0.72 0.574472
Target:  5'- aGCGGCGAUgGCgccgCAGCUGGcCGAa-- -3'
miRNA:   3'- -CGCCGCUAgCGa---GUUGACUaGUUagu -5'
30416 5' -49.7 NC_006548.1 + 12211 0.73 0.539926
Target:  5'- cGCGGCGAUacUGCUCGGCggcccgcggGAUCucAUCGg -3'
miRNA:   3'- -CGCCGCUA--GCGAGUUGa--------CUAGu-UAGU- -5'
30416 5' -49.7 NC_006548.1 + 6939 0.74 0.473231
Target:  5'- cGCGGCuGAUCGC---GCUGAUCGAcaUCGg -3'
miRNA:   3'- -CGCCG-CUAGCGaguUGACUAGUU--AGU- -5'
30416 5' -49.7 NC_006548.1 + 5512 1.01 0.008841
Target:  5'- gGCGGCG-UCGCUCAACUGAUCAAUCAc -3'
miRNA:   3'- -CGCCGCuAGCGAGUUGACUAGUUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.