miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 5' -56.9 NC_006548.1 + 25927 0.66 0.494881
Target:  5'- -cGGCCcGCGCGggccAGcAGGcGGUGACa -3'
miRNA:   3'- gaCCGGaCGCGCa---UCaUCCuCCGUUG- -5'
30417 5' -56.9 NC_006548.1 + 6648 0.66 0.505555
Target:  5'- -aGGCCaUGCaagaGCGUGGU-GGAGcCGACa -3'
miRNA:   3'- gaCCGG-ACG----CGCAUCAuCCUCcGUUG- -5'
30417 5' -56.9 NC_006548.1 + 36651 0.67 0.433197
Target:  5'- -aGGCCgGCGCGcugaucUGGUucuacgAGGAuugGGCAACa -3'
miRNA:   3'- gaCCGGaCGCGC------AUCA------UCCU---CCGUUG- -5'
30417 5' -56.9 NC_006548.1 + 13739 0.67 0.423354
Target:  5'- -cGGCCUGCucgaugGCGUccagccGGUAGGAGaGCu-- -3'
miRNA:   3'- gaCCGGACG------CGCA------UCAUCCUC-CGuug -5'
30417 5' -56.9 NC_006548.1 + 3034 0.68 0.39278
Target:  5'- -cGGCCgagcaguaccagGCGaa-GGUAGGAGGCAAg -3'
miRNA:   3'- gaCCGGa-----------CGCgcaUCAUCCUCCGUUg -5'
30417 5' -56.9 NC_006548.1 + 34963 0.69 0.309297
Target:  5'- gCUGGcCCUGCGCcUGGUcagccacgcacgugcGGAGGCGAg -3'
miRNA:   3'- -GACC-GGACGCGcAUCAu--------------CCUCCGUUg -5'
30417 5' -56.9 NC_006548.1 + 21293 0.69 0.332765
Target:  5'- -cGGCCUgGCGcCGgucgAGUAcGGcGGCAACg -3'
miRNA:   3'- gaCCGGA-CGC-GCa---UCAU-CCuCCGUUG- -5'
30417 5' -56.9 NC_006548.1 + 27873 0.69 0.341155
Target:  5'- cCUGGCgggugaggugCaGCGCaGUGGUGGccGAGGCGACg -3'
miRNA:   3'- -GACCG----------GaCGCG-CAUCAUC--CUCCGUUG- -5'
30417 5' -56.9 NC_006548.1 + 4806 0.7 0.278306
Target:  5'- -aGcGCCUGCGUG-AGUuGGAGGaCGGCu -3'
miRNA:   3'- gaC-CGGACGCGCaUCAuCCUCC-GUUG- -5'
30417 5' -56.9 NC_006548.1 + 15629 0.7 0.293105
Target:  5'- -cGGUCUGCGgGUAuuccgcGGAGGCAAUc -3'
miRNA:   3'- gaCCGGACGCgCAUcau---CCUCCGUUG- -5'
30417 5' -56.9 NC_006548.1 + 15201 0.72 0.194704
Target:  5'- -cGGCCUGCGCGUccgGGUugcuGGAcauacuguggauacGGCGGCc -3'
miRNA:   3'- gaCCGGACGCGCA---UCAu---CCU--------------CCGUUG- -5'
30417 5' -56.9 NC_006548.1 + 5618 1.09 0.00034
Target:  5'- cCUGGCCUGCGCGUAGUAGGAGGCAACu -3'
miRNA:   3'- -GACCGGACGCGCAUCAUCCUCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.