miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30418 3' -52 NC_006548.1 + 35057 0.66 0.767829
Target:  5'- uACGGcCGCCC-AUUGCUCGCCUc---- -3'
miRNA:   3'- -UGCU-GUGGGuUGACGGGUGGAaauac -5'
30418 3' -52 NC_006548.1 + 26290 0.66 0.767829
Target:  5'- cCGACAUCCAGCgcgccGCgCGCUUUUAc- -3'
miRNA:   3'- uGCUGUGGGUUGa----CGgGUGGAAAUac -5'
30418 3' -52 NC_006548.1 + 34138 0.67 0.723763
Target:  5'- --uGCACCCGGCUGUCgGCCg----- -3'
miRNA:   3'- ugcUGUGGGUUGACGGgUGGaaauac -5'
30418 3' -52 NC_006548.1 + 1375 0.67 0.723763
Target:  5'- cCGACuuuCUCGAuCUGCCCGCCg----- -3'
miRNA:   3'- uGCUGu--GGGUU-GACGGGUGGaaauac -5'
30418 3' -52 NC_006548.1 + 23727 0.67 0.70563
Target:  5'- cACGAuCACCCAACUgcgagauuuccgcacGCCagcaGCCUaUGUGc -3'
miRNA:   3'- -UGCU-GUGGGUUGA---------------CGGg---UGGAaAUAC- -5'
30418 3' -52 NC_006548.1 + 9603 0.67 0.689593
Target:  5'- cGCGGCGCgCCAGgUGUCCAUCg----- -3'
miRNA:   3'- -UGCUGUG-GGUUgACGGGUGGaaauac -5'
30418 3' -52 NC_006548.1 + 13304 0.68 0.678061
Target:  5'- uCGGCGCCgGuUUGCCCGCCg----- -3'
miRNA:   3'- uGCUGUGGgUuGACGGGUGGaaauac -5'
30418 3' -52 NC_006548.1 + 37484 0.68 0.631573
Target:  5'- cUGGCACCCgu-UGCCCACCa----- -3'
miRNA:   3'- uGCUGUGGGuugACGGGUGGaaauac -5'
30418 3' -52 NC_006548.1 + 24532 0.69 0.619922
Target:  5'- gGCGAUcuggGCCUcgcagaucgAGCUGCCCGCCgacacgGUGa -3'
miRNA:   3'- -UGCUG----UGGG---------UUGACGGGUGGaaa---UAC- -5'
30418 3' -52 NC_006548.1 + 29275 0.69 0.608283
Target:  5'- uCGACaauACCCGGCUGgCCGCCg----- -3'
miRNA:   3'- uGCUG---UGGGUUGACgGGUGGaaauac -5'
30418 3' -52 NC_006548.1 + 21147 0.69 0.585086
Target:  5'- aGCGGCGCCaucGCcGCCCGCCguaucGUGa -3'
miRNA:   3'- -UGCUGUGGgu-UGaCGGGUGGaaa--UAC- -5'
30418 3' -52 NC_006548.1 + 1729 0.7 0.562064
Target:  5'- gGCGGCAgguccaUCCAACUGCUCGCCc----- -3'
miRNA:   3'- -UGCUGU------GGGUUGACGGGUGGaaauac -5'
30418 3' -52 NC_006548.1 + 22244 0.7 0.505763
Target:  5'- cCGACACCCGcaACgGCaCCACCUUc--- -3'
miRNA:   3'- uGCUGUGGGU--UGaCG-GGUGGAAauac -5'
30418 3' -52 NC_006548.1 + 5852 1.08 0.00151
Target:  5'- gACGACACCCAACUGCCCACCUUUAUGc -3'
miRNA:   3'- -UGCUGUGGGUUGACGGGUGGAAAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.