miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30420 3' -56.5 NC_006548.1 + 3145 0.66 0.555468
Target:  5'- aGCGCGACCgCCuuGUGcAGGAgAucguugccaagGGGAAGg -3'
miRNA:   3'- -CGCGCUGGaGG--CGC-UCCUgU-----------UCCUUC- -5'
30420 3' -56.5 NC_006548.1 + 16923 0.66 0.530587
Target:  5'- -aGCGGCCgaCCGcCGuGGGCAuaccgaacuuguccAGGAAGa -3'
miRNA:   3'- cgCGCUGGa-GGC-GCuCCUGU--------------UCCUUC- -5'
30420 3' -56.5 NC_006548.1 + 19156 0.67 0.523094
Target:  5'- aGCG-GGCUUCUGC-AGGAUAucGGGGAGc -3'
miRNA:   3'- -CGCgCUGGAGGCGcUCCUGU--UCCUUC- -5'
30420 3' -56.5 NC_006548.1 + 33871 0.67 0.523094
Target:  5'- cGCGCGGCCg--GUGAGcGACGAuGGAc- -3'
miRNA:   3'- -CGCGCUGGaggCGCUC-CUGUU-CCUuc -5'
30420 3' -56.5 NC_006548.1 + 15864 0.67 0.512461
Target:  5'- gGCuGUGACCUucaccCCGCGAGua-AAGGAGGc -3'
miRNA:   3'- -CG-CGCUGGA-----GGCGCUCcugUUCCUUC- -5'
30420 3' -56.5 NC_006548.1 + 13159 0.68 0.450752
Target:  5'- cGCGCGACCUgCUGCuuguacuGGACcAGGGc- -3'
miRNA:   3'- -CGCGCUGGA-GGCGcu-----CCUGuUCCUuc -5'
30420 3' -56.5 NC_006548.1 + 25356 0.68 0.440863
Target:  5'- uGCGCGACCagCgaaugGUGGGcGGCAAGGAc- -3'
miRNA:   3'- -CGCGCUGGagG-----CGCUC-CUGUUCCUuc -5'
30420 3' -56.5 NC_006548.1 + 29435 0.69 0.38425
Target:  5'- cCGCGGCCUCCuGC-AGcGACAGGGu-- -3'
miRNA:   3'- cGCGCUGGAGG-CGcUC-CUGUUCCuuc -5'
30420 3' -56.5 NC_006548.1 + 3991 0.72 0.272085
Target:  5'- uGCGCGAUggUUUCGCGaAGGACcAGGAGc -3'
miRNA:   3'- -CGCGCUG--GAGGCGC-UCCUGuUCCUUc -5'
30420 3' -56.5 NC_006548.1 + 20490 0.72 0.245272
Target:  5'- cGCGCGuCCUCCucguCGAGGACAacugccauuguGGGAu- -3'
miRNA:   3'- -CGCGCuGGAGGc---GCUCCUGU-----------UCCUuc -5'
30420 3' -56.5 NC_006548.1 + 7789 1.09 0.000492
Target:  5'- uGCGCGACCUCCGCGAGGACAAGGAAGc -3'
miRNA:   3'- -CGCGCUGGAGGCGCUCCUGUUCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.