Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30423 | 3' | -53.4 | NC_006548.1 | + | 2712 | 0.81 | 0.107114 |
Target: 5'- cGUUCGUcAUCGAUCuGCAGGCGGCGCa -3' miRNA: 3'- -CGGGCAcUAGUUAGcUGUCCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 31546 | 0.66 | 0.744663 |
Target: 5'- gGCuCCGUaAUCuAUCaGGCAGGCcaGAUGCu -3' miRNA: 3'- -CG-GGCAcUAGuUAG-CUGUCCG--CUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 18125 | 0.66 | 0.744663 |
Target: 5'- gGCCUgGUGAUCcAUgcCGACAauccuugguGGCGaACGCa -3' miRNA: 3'- -CGGG-CACUAGuUA--GCUGU---------CCGC-UGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 35092 | 0.66 | 0.744663 |
Target: 5'- aGCUgGUcgaGAUCAa--GGCAGGUGAuCGCa -3' miRNA: 3'- -CGGgCA---CUAGUuagCUGUCCGCU-GCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 35709 | 0.66 | 0.733894 |
Target: 5'- aUCCGUGA-CGAcuaCGACGucGCGACGCu -3' miRNA: 3'- cGGGCACUaGUUa--GCUGUc-CGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 35249 | 0.67 | 0.712044 |
Target: 5'- aCCgGUGaAUCc-UCGACuGGCGGCGa -3' miRNA: 3'- cGGgCAC-UAGuuAGCUGuCCGCUGCg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 4387 | 0.67 | 0.700989 |
Target: 5'- cCCCcUGAUCAcAUCGGCAG-UGACGa -3' miRNA: 3'- cGGGcACUAGU-UAGCUGUCcGCUGCg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 28773 | 0.67 | 0.689863 |
Target: 5'- aGCCCGUGcUCGcgCcGCcuGGGCGACc- -3' miRNA: 3'- -CGGGCACuAGUuaGcUG--UCCGCUGcg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 35861 | 0.67 | 0.675313 |
Target: 5'- uGCCCGUGcgaagaaugccggcgCGAUccgcgCGGCcGGCGGCGUg -3' miRNA: 3'- -CGGGCACua-------------GUUA-----GCUGuCCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 33876 | 0.68 | 0.610992 |
Target: 5'- gGCCgGUGAgCGA-CGAUGGaCGGCGCa -3' miRNA: 3'- -CGGgCACUaGUUaGCUGUCcGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 3409 | 0.69 | 0.588472 |
Target: 5'- aGCUCG-GuAUCAAUCuGCAGGuCGAuCGCg -3' miRNA: 3'- -CGGGCaC-UAGUUAGcUGUCC-GCU-GCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 8929 | 0.7 | 0.522113 |
Target: 5'- uGCCCcagGUGGUCGAUgGcCAGGCGcucgacccCGCg -3' miRNA: 3'- -CGGG---CACUAGUUAgCuGUCCGCu-------GCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 29907 | 0.71 | 0.438675 |
Target: 5'- gGCgCUGUGcggCAcgCGACGGGCGGCa- -3' miRNA: 3'- -CG-GGCACua-GUuaGCUGUCCGCUGcg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 36276 | 0.73 | 0.363393 |
Target: 5'- -aCCGUGAUCucgCGGCGGcacugaGCGAUGCa -3' miRNA: 3'- cgGGCACUAGuuaGCUGUC------CGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 12192 | 0.69 | 0.588472 |
Target: 5'- gGCCCGcggGAUCucAUCGGCcuuGGcCGACGa -3' miRNA: 3'- -CGGGCa--CUAGu-UAGCUGu--CC-GCUGCg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 11761 | 0.69 | 0.588472 |
Target: 5'- cGUCCaGcUGGUCAugcgCGGCGcgcGGCGGCGCc -3' miRNA: 3'- -CGGG-C-ACUAGUua--GCUGU---CCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 20441 | 0.71 | 0.468088 |
Target: 5'- gGCCCGU--UCGGcgccuucgcgcUCGacgaagaagucacGCAGGCGGCGCa -3' miRNA: 3'- -CGGGCAcuAGUU-----------AGC-------------UGUCCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 21224 | 0.72 | 0.419018 |
Target: 5'- uGCCaugGAUCAcgAUaCGGCGGGCGGCGa -3' miRNA: 3'- -CGGgcaCUAGU--UA-GCUGUCCGCUGCg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 37408 | 0.73 | 0.337564 |
Target: 5'- gGCCUGgccgcUAGUCGGCAgcguGGCGACGCg -3' miRNA: 3'- -CGGGCacua-GUUAGCUGU----CCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 13265 | 0.66 | 0.765829 |
Target: 5'- cGCUCGguaggCGGUCGAUacauGGGCGAuuCGCu -3' miRNA: 3'- -CGGGCacua-GUUAGCUG----UCCGCU--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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