miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30423 5' -54.9 NC_006548.1 + 19752 0.66 0.570645
Target:  5'- gAGGCGUCGAuacGgGuUGUCGGCGCGUCAc -3'
miRNA:   3'- -UUUGCGGCU---CgC-GUAGCUGCGUAGUu -5'
30423 5' -54.9 NC_006548.1 + 7010 0.66 0.569504
Target:  5'- ---aGCCGcuGGCGCGaagauccUCGAcCGCAUCAGc -3'
miRNA:   3'- uuugCGGC--UCGCGU-------AGCU-GCGUAGUU- -5'
30423 5' -54.9 NC_006548.1 + 14211 0.66 0.569504
Target:  5'- cGAUGCCGGGUucGCAgucgaugguguacUCGGCGaCGUCAGu -3'
miRNA:   3'- uUUGCGGCUCG--CGU-------------AGCUGC-GUAGUU- -5'
30423 5' -54.9 NC_006548.1 + 38272 0.67 0.492586
Target:  5'- ---gGCCGAGCuGC-UCGAUGCAUUc- -3'
miRNA:   3'- uuugCGGCUCG-CGuAGCUGCGUAGuu -5'
30423 5' -54.9 NC_006548.1 + 13393 0.68 0.439946
Target:  5'- uGAGCGCCG-GCGgaAUCGGCGCGc--- -3'
miRNA:   3'- -UUUGCGGCuCGCg-UAGCUGCGUaguu -5'
30423 5' -54.9 NC_006548.1 + 36630 0.69 0.419802
Target:  5'- cGGCGuuGAuCGCGUCGACGCGg--- -3'
miRNA:   3'- uUUGCggCUcGCGUAGCUGCGUaguu -5'
30423 5' -54.9 NC_006548.1 + 19689 0.69 0.409941
Target:  5'- -cGCGCCGAcaaccCGUAUCGACGCcucUCGAa -3'
miRNA:   3'- uuUGCGGCUc----GCGUAGCUGCGu--AGUU- -5'
30423 5' -54.9 NC_006548.1 + 12153 0.69 0.409941
Target:  5'- --cCGCCGAGCaGUAUCGcCGCGUg-- -3'
miRNA:   3'- uuuGCGGCUCG-CGUAGCuGCGUAguu -5'
30423 5' -54.9 NC_006548.1 + 12574 0.69 0.39066
Target:  5'- cAACGCCGGGCGC-UCGGC-CGcCAAc -3'
miRNA:   3'- uUUGCGGCUCGCGuAGCUGcGUaGUU- -5'
30423 5' -54.9 NC_006548.1 + 7314 0.69 0.37198
Target:  5'- aGAGCGCCGgucaggggcAGCGCA-CGGCGCuaugCAAa -3'
miRNA:   3'- -UUUGCGGC---------UCGCGUaGCUGCGua--GUU- -5'
30423 5' -54.9 NC_006548.1 + 15772 0.7 0.345122
Target:  5'- cAGCGCUguGAGCGCAUC--UGCAUCGAc -3'
miRNA:   3'- uUUGCGG--CUCGCGUAGcuGCGUAGUU- -5'
30423 5' -54.9 NC_006548.1 + 14662 0.7 0.328005
Target:  5'- uGACGCUgGAGCGCGUCaGCGUcgCGAu -3'
miRNA:   3'- uUUGCGG-CUCGCGUAGcUGCGuaGUU- -5'
30423 5' -54.9 NC_006548.1 + 33561 0.71 0.311523
Target:  5'- cGACGUCGAGCGC-UUGGCG-AUCGAc -3'
miRNA:   3'- uUUGCGGCUCGCGuAGCUGCgUAGUU- -5'
30423 5' -54.9 NC_006548.1 + 12937 0.72 0.265887
Target:  5'- -cGCGCUGAGCGCGgugcugugCGGCGCAg--- -3'
miRNA:   3'- uuUGCGGCUCGCGUa-------GCUGCGUaguu -5'
30423 5' -54.9 NC_006548.1 + 36683 0.72 0.258829
Target:  5'- cGGCGCUGGcacCGUAUCGACGCAUCc- -3'
miRNA:   3'- uUUGCGGCUc--GCGUAGCUGCGUAGuu -5'
30423 5' -54.9 NC_006548.1 + 33608 0.75 0.151937
Target:  5'- ---gGCCGAGCGaCGUCGcACGCAUCu- -3'
miRNA:   3'- uuugCGGCUCGC-GUAGC-UGCGUAGuu -5'
30423 5' -54.9 NC_006548.1 + 9268 1.04 0.00122
Target:  5'- cAAACGCCGAGCGCAUCGACGCAUCAAg -3'
miRNA:   3'- -UUUGCGGCUCGCGUAGCUGCGUAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.