miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30425 3' -46.1 NC_006548.1 + 19373 0.66 0.987296
Target:  5'- gCGCAGCAgg-UUGC---GCAGGuGGCc -3'
miRNA:   3'- gGCGUUGUagaAACGuaaUGUCC-UCG- -5'
30425 3' -46.1 NC_006548.1 + 26468 0.66 0.987296
Target:  5'- gCCGCGACAguguuUCUUccagGCGcaACAGGuugAGCc -3'
miRNA:   3'- -GGCGUUGU-----AGAAa---CGUaaUGUCC---UCG- -5'
30425 3' -46.1 NC_006548.1 + 6070 0.66 0.985374
Target:  5'- uUGCAcuGCAUCUUcGCGc--CAGGGGUu -3'
miRNA:   3'- gGCGU--UGUAGAAaCGUaauGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 29607 0.66 0.984119
Target:  5'- gCCGCAGCcaGUCUUgcggccgcgaauggGCuc-GCAGGuGCu -3'
miRNA:   3'- -GGCGUUG--UAGAAa-------------CGuaaUGUCCuCG- -5'
30425 3' -46.1 NC_006548.1 + 3144 0.66 0.983237
Target:  5'- gCGCGACcgCcUUGU---GCAGGAGa -3'
miRNA:   3'- gGCGUUGuaGaAACGuaaUGUCCUCg -5'
30425 3' -46.1 NC_006548.1 + 34814 0.66 0.980872
Target:  5'- -aGC-GCAUCUgcGCAgugUACcGGGGCu -3'
miRNA:   3'- ggCGuUGUAGAaaCGUa--AUGuCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 33619 0.66 0.980623
Target:  5'- gUCGCAcGCAUCUcauucaugacacuUUGCcg-GCAGGAcaGCg -3'
miRNA:   3'- -GGCGU-UGUAGA-------------AACGuaaUGUCCU--CG- -5'
30425 3' -46.1 NC_006548.1 + 34350 0.67 0.972284
Target:  5'- gCGCGGCAUCga-GCAacACAcGGGCa -3'
miRNA:   3'- gGCGUUGUAGaaaCGUaaUGUcCUCG- -5'
30425 3' -46.1 NC_006548.1 + 10174 0.67 0.968883
Target:  5'- aCGCAGCAagcgCgagcGCAU--CAGGAGCc -3'
miRNA:   3'- gGCGUUGUa---Gaaa-CGUAauGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 3581 0.68 0.95232
Target:  5'- gCGUAACggCUUcgucgGCGUaGCAGGuAGCa -3'
miRNA:   3'- gGCGUUGuaGAAa----CGUAaUGUCC-UCG- -5'
30425 3' -46.1 NC_006548.1 + 24153 0.68 0.947399
Target:  5'- -gGCGGCGUC-UUGUuucuugGCGGGGGUg -3'
miRNA:   3'- ggCGUUGUAGaAACGuaa---UGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 5277 0.68 0.946889
Target:  5'- cUCGUuuucuugAACGUUUUcggGgGUUGCAGGAGCc -3'
miRNA:   3'- -GGCG-------UUGUAGAAa--CgUAAUGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 11587 0.69 0.924439
Target:  5'- gCGUGACgaugauGUCcggGCGUccUGCAGGAGCa -3'
miRNA:   3'- gGCGUUG------UAGaaaCGUA--AUGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 2174 0.69 0.924439
Target:  5'- uUGCAGCGUUUcUGCGUgcuCAGGAaGUc -3'
miRNA:   3'- gGCGUUGUAGAaACGUAau-GUCCU-CG- -5'
30425 3' -46.1 NC_006548.1 + 29436 0.69 0.91787
Target:  5'- aCCGCGGCcUCc-UGCAgcgACAGGGuGCc -3'
miRNA:   3'- -GGCGUUGuAGaaACGUaa-UGUCCU-CG- -5'
30425 3' -46.1 NC_006548.1 + 4182 0.7 0.888313
Target:  5'- uCCGCGGCAUUcg-GCAgaccacccGCGGGAGg -3'
miRNA:   3'- -GGCGUUGUAGaaaCGUaa------UGUCCUCg -5'
30425 3' -46.1 NC_006548.1 + 27131 0.71 0.862836
Target:  5'- gCCGCAGCAUCcuggGCcgauuguuGUUGCAGcGAGg -3'
miRNA:   3'- -GGCGUUGUAGaaa-CG--------UAAUGUC-CUCg -5'
30425 3' -46.1 NC_006548.1 + 32425 0.72 0.834761
Target:  5'- gCCGUuGCcguUCgcgGCGcUGCAGGAGCg -3'
miRNA:   3'- -GGCGuUGu--AGaaaCGUaAUGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 3876 0.72 0.793806
Target:  5'- gCUGCAuGCGgagCUgcagUGCAUggcggucuaccUGCAGGAGCg -3'
miRNA:   3'- -GGCGU-UGUa--GAa---ACGUA-----------AUGUCCUCG- -5'
30425 3' -46.1 NC_006548.1 + 30008 0.73 0.738168
Target:  5'- cCCGgAGCAg----GCAUUGCGGGuGCg -3'
miRNA:   3'- -GGCgUUGUagaaaCGUAAUGUCCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.