Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30425 | 3' | -46.1 | NC_006548.1 | + | 19373 | 0.66 | 0.987296 |
Target: 5'- gCGCAGCAgg-UUGC---GCAGGuGGCc -3' miRNA: 3'- gGCGUUGUagaAACGuaaUGUCC-UCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 26468 | 0.66 | 0.987296 |
Target: 5'- gCCGCGACAguguuUCUUccagGCGcaACAGGuugAGCc -3' miRNA: 3'- -GGCGUUGU-----AGAAa---CGUaaUGUCC---UCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 6070 | 0.66 | 0.985374 |
Target: 5'- uUGCAcuGCAUCUUcGCGc--CAGGGGUu -3' miRNA: 3'- gGCGU--UGUAGAAaCGUaauGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 29607 | 0.66 | 0.984119 |
Target: 5'- gCCGCAGCcaGUCUUgcggccgcgaauggGCuc-GCAGGuGCu -3' miRNA: 3'- -GGCGUUG--UAGAAa-------------CGuaaUGUCCuCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 3144 | 0.66 | 0.983237 |
Target: 5'- gCGCGACcgCcUUGU---GCAGGAGa -3' miRNA: 3'- gGCGUUGuaGaAACGuaaUGUCCUCg -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 34814 | 0.66 | 0.980872 |
Target: 5'- -aGC-GCAUCUgcGCAgugUACcGGGGCu -3' miRNA: 3'- ggCGuUGUAGAaaCGUa--AUGuCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 33619 | 0.66 | 0.980623 |
Target: 5'- gUCGCAcGCAUCUcauucaugacacuUUGCcg-GCAGGAcaGCg -3' miRNA: 3'- -GGCGU-UGUAGA-------------AACGuaaUGUCCU--CG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 34350 | 0.67 | 0.972284 |
Target: 5'- gCGCGGCAUCga-GCAacACAcGGGCa -3' miRNA: 3'- gGCGUUGUAGaaaCGUaaUGUcCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 10174 | 0.67 | 0.968883 |
Target: 5'- aCGCAGCAagcgCgagcGCAU--CAGGAGCc -3' miRNA: 3'- gGCGUUGUa---Gaaa-CGUAauGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 3581 | 0.68 | 0.95232 |
Target: 5'- gCGUAACggCUUcgucgGCGUaGCAGGuAGCa -3' miRNA: 3'- gGCGUUGuaGAAa----CGUAaUGUCC-UCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 24153 | 0.68 | 0.947399 |
Target: 5'- -gGCGGCGUC-UUGUuucuugGCGGGGGUg -3' miRNA: 3'- ggCGUUGUAGaAACGuaa---UGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 5277 | 0.68 | 0.946889 |
Target: 5'- cUCGUuuucuugAACGUUUUcggGgGUUGCAGGAGCc -3' miRNA: 3'- -GGCG-------UUGUAGAAa--CgUAAUGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 2174 | 0.69 | 0.924439 |
Target: 5'- uUGCAGCGUUUcUGCGUgcuCAGGAaGUc -3' miRNA: 3'- gGCGUUGUAGAaACGUAau-GUCCU-CG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 11587 | 0.69 | 0.924439 |
Target: 5'- gCGUGACgaugauGUCcggGCGUccUGCAGGAGCa -3' miRNA: 3'- gGCGUUG------UAGaaaCGUA--AUGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 29436 | 0.69 | 0.91787 |
Target: 5'- aCCGCGGCcUCc-UGCAgcgACAGGGuGCc -3' miRNA: 3'- -GGCGUUGuAGaaACGUaa-UGUCCU-CG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 4182 | 0.7 | 0.888313 |
Target: 5'- uCCGCGGCAUUcg-GCAgaccacccGCGGGAGg -3' miRNA: 3'- -GGCGUUGUAGaaaCGUaa------UGUCCUCg -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 27131 | 0.71 | 0.862836 |
Target: 5'- gCCGCAGCAUCcuggGCcgauuguuGUUGCAGcGAGg -3' miRNA: 3'- -GGCGUUGUAGaaa-CG--------UAAUGUC-CUCg -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 32425 | 0.72 | 0.834761 |
Target: 5'- gCCGUuGCcguUCgcgGCGcUGCAGGAGCg -3' miRNA: 3'- -GGCGuUGu--AGaaaCGUaAUGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 3876 | 0.72 | 0.793806 |
Target: 5'- gCUGCAuGCGgagCUgcagUGCAUggcggucuaccUGCAGGAGCg -3' miRNA: 3'- -GGCGU-UGUa--GAa---ACGUA-----------AUGUCCUCG- -5' |
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30425 | 3' | -46.1 | NC_006548.1 | + | 30008 | 0.73 | 0.738168 |
Target: 5'- cCCGgAGCAg----GCAUUGCGGGuGCg -3' miRNA: 3'- -GGCgUUGUagaaaCGUAAUGUCCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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