miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30425 5' -57 NC_006548.1 + 33021 0.67 0.440505
Target:  5'- aGcGCCGCUGCAccgggcgcGCCAGuugaaucGCCgaCGCGg -3'
miRNA:   3'- aC-CGGCGACGU--------UGGUUu------CGGgaGUGC- -5'
30425 5' -57 NC_006548.1 + 28056 0.67 0.440505
Target:  5'- cGGCCGCcGgAAUCAGgcccuuuuccAGCCaCUCGCu -3'
miRNA:   3'- aCCGGCGaCgUUGGUU----------UCGG-GAGUGc -5'
30425 5' -57 NC_006548.1 + 1126 0.67 0.420813
Target:  5'- cUGGCCGuCUGCGcgGCCAGcaacGCCUgUGCGg -3'
miRNA:   3'- -ACCGGC-GACGU--UGGUUu---CGGGaGUGC- -5'
30425 5' -57 NC_006548.1 + 29880 0.67 0.420813
Target:  5'- cGGCUggGUUGCGGCCGccGCCCggAUGa -3'
miRNA:   3'- aCCGG--CGACGUUGGUuuCGGGagUGC- -5'
30425 5' -57 NC_006548.1 + 24446 0.67 0.420813
Target:  5'- gUGGCCauCUGCAGggUCAAGGCCggCACGu -3'
miRNA:   3'- -ACCGGc-GACGUU--GGUUUCGGgaGUGC- -5'
30425 5' -57 NC_006548.1 + 5988 0.67 0.420813
Target:  5'- gGGUCGC-GUAGCC---GCCCUCAUc -3'
miRNA:   3'- aCCGGCGaCGUUGGuuuCGGGAGUGc -5'
30425 5' -57 NC_006548.1 + 13846 0.67 0.411168
Target:  5'- cUGGCCGCg--GAUau-AGUCCUCGCGg -3'
miRNA:   3'- -ACCGGCGacgUUGguuUCGGGAGUGC- -5'
30425 5' -57 NC_006548.1 + 27255 0.67 0.411168
Target:  5'- aGGCUGCUGCugaaacAGCCAAgcaggaugcGGCCg-CACGu -3'
miRNA:   3'- aCCGGCGACG------UUGGUU---------UCGGgaGUGC- -5'
30425 5' -57 NC_006548.1 + 32936 0.68 0.392296
Target:  5'- --aCCGCgcaGCAGCgCAAGGCCCccagCACGa -3'
miRNA:   3'- accGGCGa--CGUUG-GUUUCGGGa---GUGC- -5'
30425 5' -57 NC_006548.1 + 32449 0.68 0.392296
Target:  5'- cGGCCagGCUGauGCCAucggcGUCCUCGCGa -3'
miRNA:   3'- aCCGG--CGACguUGGUuu---CGGGAGUGC- -5'
30425 5' -57 NC_006548.1 + 25761 0.68 0.373997
Target:  5'- aGuGCCaGCc-CAGCCAAGGCCCUCcCGc -3'
miRNA:   3'- aC-CGG-CGacGUUGGUUUCGGGAGuGC- -5'
30425 5' -57 NC_006548.1 + 5914 0.68 0.373997
Target:  5'- aGGCUGCgcGCAagGCCAAGGCCgUUcCGu -3'
miRNA:   3'- aCCGGCGa-CGU--UGGUUUCGGgAGuGC- -5'
30425 5' -57 NC_006548.1 + 4966 0.68 0.365953
Target:  5'- aUGGCUGCgguugcgccacuggaGCGGCCGaaaucGAGCCCggaggCACGc -3'
miRNA:   3'- -ACCGGCGa--------------CGUUGGU-----UUCGGGa----GUGC- -5'
30425 5' -57 NC_006548.1 + 26317 0.69 0.330841
Target:  5'- cGGCCGggucucCUGCAGCCAcuugAAGaCCUgGCGa -3'
miRNA:   3'- aCCGGC------GACGUUGGU----UUCgGGAgUGC- -5'
30425 5' -57 NC_006548.1 + 18711 0.69 0.322662
Target:  5'- cGGCgGUUGUcGCCAuGGCUUUCGCa -3'
miRNA:   3'- aCCGgCGACGuUGGUuUCGGGAGUGc -5'
30425 5' -57 NC_006548.1 + 33206 0.7 0.299036
Target:  5'- gGGCCGCUGCccgagcACCGGccAGCCCcggUAUGu -3'
miRNA:   3'- aCCGGCGACGu-----UGGUU--UCGGGa--GUGC- -5'
30425 5' -57 NC_006548.1 + 29084 0.7 0.299036
Target:  5'- gGaGCUGCUGCAGCuCAGccuuGGCCUUCuCGa -3'
miRNA:   3'- aC-CGGCGACGUUG-GUU----UCGGGAGuGC- -5'
30425 5' -57 NC_006548.1 + 1183 0.7 0.299036
Target:  5'- cUGGCCGC-GCAgacgGCC-AGGCUcgCUCGCGa -3'
miRNA:   3'- -ACCGGCGaCGU----UGGuUUCGG--GAGUGC- -5'
30425 5' -57 NC_006548.1 + 33370 0.7 0.276772
Target:  5'- aGGCUGC-GCAgcGCCGcauGCuCCUCGCGg -3'
miRNA:   3'- aCCGGCGaCGU--UGGUuu-CG-GGAGUGC- -5'
30425 5' -57 NC_006548.1 + 587 0.7 0.269651
Target:  5'- cGGCCGCcuguucuggaUGCucgauGCCcAGGCCCUgGCa -3'
miRNA:   3'- aCCGGCG----------ACGu----UGGuUUCGGGAgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.