miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30426 5' -55.4 NC_006548.1 + 28883 0.66 0.630018
Target:  5'- aCCUUCGggccaccGGCCaaaccgucgAgGCGGCcGGCGCc -3'
miRNA:   3'- -GGAAGCaa-----CCGGg--------UgCGUCGuUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 9753 0.66 0.630018
Target:  5'- gCUUUgaGUUGGCCauugagaACGCGGUAgacgucguuacgGGCGUa -3'
miRNA:   3'- gGAAG--CAACCGGg------UGCGUCGU------------UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 1180 0.66 0.618748
Target:  5'- aCCUUCG--GGUUCACGCcaggAGCcGGCuGCa -3'
miRNA:   3'- -GGAAGCaaCCGGGUGCG----UCGuUCG-CG- -5'
30426 5' -55.4 NC_006548.1 + 37477 0.66 0.618748
Target:  5'- ---cCGUU-GCCCAC-CAGCGAGCuagGCg -3'
miRNA:   3'- ggaaGCAAcCGGGUGcGUCGUUCG---CG- -5'
30426 5' -55.4 NC_006548.1 + 13555 0.66 0.617622
Target:  5'- aCCUUCcucgGuGCCUGCGCgggcggcGGCAAGCuGCu -3'
miRNA:   3'- -GGAAGcaa-C-CGGGUGCG-------UCGUUCG-CG- -5'
30426 5' -55.4 NC_006548.1 + 18560 0.66 0.607491
Target:  5'- aCCgUUGagGGCaugaGCGCAGCuGGCGUg -3'
miRNA:   3'- -GGaAGCaaCCGgg--UGCGUCGuUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 25983 0.66 0.596257
Target:  5'- cCCUcagaUgGUUaaucGCCC-CGCAGCGGGgGCa -3'
miRNA:   3'- -GGA----AgCAAc---CGGGuGCGUCGUUCgCG- -5'
30426 5' -55.4 NC_006548.1 + 32866 0.66 0.585054
Target:  5'- uUUUCGUgcugggGGCCuUGCGCuGCu-GCGCg -3'
miRNA:   3'- gGAAGCAa-----CCGG-GUGCGuCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 2930 0.66 0.585054
Target:  5'- gCCUUCGacgaGcGCCUGCagGCGGCcaAGGCGCu -3'
miRNA:   3'- -GGAAGCaa--C-CGGGUG--CGUCG--UUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 33281 0.66 0.573892
Target:  5'- gCUUcCGUUGGCagaccuccggCCGCGaggAGCAugcGGCGCu -3'
miRNA:   3'- gGAA-GCAACCG----------GGUGCg--UCGU---UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 15755 0.67 0.56278
Target:  5'- uCCUc---UGGCCCugguuccaGCGCuGUGAGCGCa -3'
miRNA:   3'- -GGAagcaACCGGG--------UGCGuCGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 23945 0.67 0.56278
Target:  5'- cCCUgaUCGcUGGacaCCGCccgGCcuGGCAGGCGCu -3'
miRNA:   3'- -GGA--AGCaACCg--GGUG---CG--UCGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 36590 0.67 0.551727
Target:  5'- gCCg-CGgccGGCaCCGCGguGCucGCGCg -3'
miRNA:   3'- -GGaaGCaa-CCG-GGUGCguCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 34033 0.67 0.551727
Target:  5'- gCCUUCGacGGCCgaGCGCcacgguacAGCu-GCGCa -3'
miRNA:   3'- -GGAAGCaaCCGGg-UGCG--------UCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 13109 0.67 0.549525
Target:  5'- gCgUUCGUUGGUgUGCuGCAGCugcagguugagcAGCGCa -3'
miRNA:   3'- -GgAAGCAACCGgGUG-CGUCGu-----------UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 35939 0.67 0.540741
Target:  5'- aCCggcgaGUUGGCCgGCaggGUGGCGGcGCGCg -3'
miRNA:   3'- -GGaag--CAACCGGgUG---CGUCGUU-CGCG- -5'
30426 5' -55.4 NC_006548.1 + 19249 0.67 0.540741
Target:  5'- cCCUugUCGccGGCCUACcuGCGGCGcaAGCGa -3'
miRNA:   3'- -GGA--AGCaaCCGGGUG--CGUCGU--UCGCg -5'
30426 5' -55.4 NC_006548.1 + 3589 0.67 0.529829
Target:  5'- gCUUCGUcGGCguagCAgGUAGCAgccAGCGCc -3'
miRNA:   3'- gGAAGCAaCCGg---GUgCGUCGU---UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 24305 0.67 0.518999
Target:  5'- uCCUUCcagGGCCggguCugGgcCGGCGAGCGCc -3'
miRNA:   3'- -GGAAGcaaCCGG----GugC--GUCGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 12926 0.67 0.518999
Target:  5'- ---aCGUucUGGCUCGCGCugAGCGcggugcugugcGGCGCa -3'
miRNA:   3'- ggaaGCA--ACCGGGUGCG--UCGU-----------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.