miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30426 5' -55.4 NC_006548.1 + 25934 0.75 0.193343
Target:  5'- --gUCGUaacGGCCCGCGCgggccAGCAGGCGg -3'
miRNA:   3'- ggaAGCAa--CCGGGUGCG-----UCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 10188 1.14 0.000262
Target:  5'- gCCUUCGUUGGCCCACGCAGCAAGCGCg -3'
miRNA:   3'- -GGAAGCAACCGGGUGCGUCGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 34033 0.67 0.551727
Target:  5'- gCCUUCGacGGCCgaGCGCcacgguacAGCu-GCGCa -3'
miRNA:   3'- -GGAAGCaaCCGGg-UGCG--------UCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 13109 0.67 0.549525
Target:  5'- gCgUUCGUUGGUgUGCuGCAGCugcagguugagcAGCGCa -3'
miRNA:   3'- -GgAAGCAACCGgGUG-CGUCGu-----------UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 36853 0.68 0.476627
Target:  5'- gCCUggCGcUGGUUCAuuCGCAGCGagucgaccGGCGCg -3'
miRNA:   3'- -GGAa-GCaACCGGGU--GCGUCGU--------UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 28708 0.68 0.466301
Target:  5'- gUCUUCGUucuguuUGGCCaggCGCGCAGC-GGCu- -3'
miRNA:   3'- -GGAAGCA------ACCGG---GUGCGUCGuUCGcg -5'
30426 5' -55.4 NC_006548.1 + 37477 0.66 0.618748
Target:  5'- ---cCGUU-GCCCAC-CAGCGAGCuagGCg -3'
miRNA:   3'- ggaaGCAAcCGGGUGcGUCGUUCG---CG- -5'
30426 5' -55.4 NC_006548.1 + 25983 0.66 0.596257
Target:  5'- cCCUcagaUgGUUaaucGCCC-CGCAGCGGGgGCa -3'
miRNA:   3'- -GGA----AgCAAc---CGGGuGCGUCGUUCgCG- -5'
30426 5' -55.4 NC_006548.1 + 7164 0.68 0.508258
Target:  5'- gCCUggggCGUgacgaGGCCCugGUgaucAGCAcGGCGUu -3'
miRNA:   3'- -GGAa---GCAa----CCGGGugCG----UCGU-UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 2326 0.68 0.456092
Target:  5'- uCCUguUCGUcGG-CUGCGCGGCG-GCGCc -3'
miRNA:   3'- -GGA--AGCAaCCgGGUGCGUCGUuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 36461 0.71 0.34401
Target:  5'- cUCUUCGaaccgUGcagaCCCACGCGGCugagcAGCGCg -3'
miRNA:   3'- -GGAAGCa----ACc---GGGUGCGUCGu----UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 20856 0.7 0.370106
Target:  5'- gCCUUC--UGGCgCG-GCAGCAGGCGg -3'
miRNA:   3'- -GGAAGcaACCGgGUgCGUCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 2930 0.66 0.585054
Target:  5'- gCCUUCGacgaGcGCCUGCagGCGGCcaAGGCGCu -3'
miRNA:   3'- -GGAAGCaa--C-CGGGUG--CGUCG--UUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 28014 0.78 0.109259
Target:  5'- gCUUUGUguuggugcccagGGCCUugGCGGCAAGCGa -3'
miRNA:   3'- gGAAGCAa-----------CCGGGugCGUCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 18560 0.66 0.607491
Target:  5'- aCCgUUGagGGCaugaGCGCAGCuGGCGUg -3'
miRNA:   3'- -GGaAGCaaCCGgg--UGCGUCGuUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 32866 0.66 0.585054
Target:  5'- uUUUCGUgcugggGGCCuUGCGCuGCu-GCGCg -3'
miRNA:   3'- gGAAGCAa-----CCGG-GUGCGuCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 33281 0.66 0.573892
Target:  5'- gCUUcCGUUGGCagaccuccggCCGCGaggAGCAugcGGCGCu -3'
miRNA:   3'- gGAA-GCAACCG----------GGUGCg--UCGU---UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 23945 0.67 0.56278
Target:  5'- cCCUgaUCGcUGGacaCCGCccgGCcuGGCAGGCGCu -3'
miRNA:   3'- -GGA--AGCaACCg--GGUG---CG--UCGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 13079 0.69 0.446004
Target:  5'- cCCUUCaGgacgcccUGGUCCAguacaaGCAGCAGGuCGCg -3'
miRNA:   3'- -GGAAG-Ca------ACCGGGUg-----CGUCGUUC-GCG- -5'
30426 5' -55.4 NC_006548.1 + 3589 0.67 0.529829
Target:  5'- gCUUCGUcGGCguagCAgGUAGCAgccAGCGCc -3'
miRNA:   3'- gGAAGCAaCCGg---GUgCGUCGU---UCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.