Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30426 | 5' | -55.4 | NC_006548.1 | + | 37477 | 0.66 | 0.618748 |
Target: 5'- ---cCGUU-GCCCAC-CAGCGAGCuagGCg -3' miRNA: 3'- ggaaGCAAcCGGGUGcGUCGUUCG---CG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 10188 | 1.14 | 0.000262 |
Target: 5'- gCCUUCGUUGGCCCACGCAGCAAGCGCg -3' miRNA: 3'- -GGAAGCAACCGGGUGCGUCGUUCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 28014 | 0.78 | 0.109259 |
Target: 5'- gCUUUGUguuggugcccagGGCCUugGCGGCAAGCGa -3' miRNA: 3'- gGAAGCAa-----------CCGGGugCGUCGUUCGCg -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 25934 | 0.75 | 0.193343 |
Target: 5'- --gUCGUaacGGCCCGCGCgggccAGCAGGCGg -3' miRNA: 3'- ggaAGCAa--CCGGGUGCG-----UCGUUCGCg -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 36461 | 0.71 | 0.34401 |
Target: 5'- cUCUUCGaaccgUGcagaCCCACGCGGCugagcAGCGCg -3' miRNA: 3'- -GGAAGCa----ACc---GGGUGCGUCGu----UCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 20856 | 0.7 | 0.370106 |
Target: 5'- gCCUUC--UGGCgCG-GCAGCAGGCGg -3' miRNA: 3'- -GGAAGcaACCGgGUgCGUCGUUCGCg -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 2326 | 0.68 | 0.456092 |
Target: 5'- uCCUguUCGUcGG-CUGCGCGGCG-GCGCc -3' miRNA: 3'- -GGA--AGCAaCCgGGUGCGUCGUuCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 28708 | 0.68 | 0.466301 |
Target: 5'- gUCUUCGUucuguuUGGCCaggCGCGCAGC-GGCu- -3' miRNA: 3'- -GGAAGCA------ACCGG---GUGCGUCGuUCGcg -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 36853 | 0.68 | 0.476627 |
Target: 5'- gCCUggCGcUGGUUCAuuCGCAGCGagucgaccGGCGCg -3' miRNA: 3'- -GGAa-GCaACCGGGU--GCGUCGU--------UCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 7164 | 0.68 | 0.508258 |
Target: 5'- gCCUggggCGUgacgaGGCCCugGUgaucAGCAcGGCGUu -3' miRNA: 3'- -GGAa---GCAa----CCGGGugCG----UCGU-UCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 13109 | 0.67 | 0.549525 |
Target: 5'- gCgUUCGUUGGUgUGCuGCAGCugcagguugagcAGCGCa -3' miRNA: 3'- -GgAAGCAACCGgGUG-CGUCGu-----------UCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 34033 | 0.67 | 0.551727 |
Target: 5'- gCCUUCGacGGCCgaGCGCcacgguacAGCu-GCGCa -3' miRNA: 3'- -GGAAGCaaCCGGg-UGCG--------UCGuuCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 2930 | 0.66 | 0.585054 |
Target: 5'- gCCUUCGacgaGcGCCUGCagGCGGCcaAGGCGCu -3' miRNA: 3'- -GGAAGCaa--C-CGGGUG--CGUCG--UUCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 25983 | 0.66 | 0.596257 |
Target: 5'- cCCUcagaUgGUUaaucGCCC-CGCAGCGGGgGCa -3' miRNA: 3'- -GGA----AgCAAc---CGGGuGCGUCGUUCgCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 1180 | 0.66 | 0.618748 |
Target: 5'- aCCUUCG--GGUUCACGCcaggAGCcGGCuGCa -3' miRNA: 3'- -GGAAGCaaCCGGGUGCG----UCGuUCG-CG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 28883 | 0.66 | 0.630018 |
Target: 5'- aCCUUCGggccaccGGCCaaaccgucgAgGCGGCcGGCGCc -3' miRNA: 3'- -GGAAGCaa-----CCGGg--------UgCGUCGuUCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 9753 | 0.66 | 0.630018 |
Target: 5'- gCUUUgaGUUGGCCauugagaACGCGGUAgacgucguuacgGGCGUa -3' miRNA: 3'- gGAAG--CAACCGGg------UGCGUCGU------------UCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 20986 | 0.7 | 0.370106 |
Target: 5'- gCUUCGgcaGuGCUCACGCcauugcagcGCGAGCGCa -3' miRNA: 3'- gGAAGCaa-C-CGGGUGCGu--------CGUUCGCG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 13555 | 0.66 | 0.617622 |
Target: 5'- aCCUUCcucgGuGCCUGCGCgggcggcGGCAAGCuGCu -3' miRNA: 3'- -GGAAGcaa-C-CGGGUGCG-------UCGUUCG-CG- -5' |
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30426 | 5' | -55.4 | NC_006548.1 | + | 18560 | 0.66 | 0.607491 |
Target: 5'- aCCgUUGagGGCaugaGCGCAGCuGGCGUg -3' miRNA: 3'- -GGaAGCaaCCGgg--UGCGUCGuUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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