miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 28607 0.67 0.881345
Target:  5'- cGGGuAGCGCCgCGAccuggcCGGCG-CCGAGCa -3'
miRNA:   3'- -UCCuUCGUGG-GUUa-----GUUGUuGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 5424 0.67 0.881345
Target:  5'- uGGGccauGGCGCgCAGUUugauGACGugcGCCAGGCa -3'
miRNA:   3'- -UCCu---UCGUGgGUUAG----UUGU---UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 36683 0.67 0.880522
Target:  5'- cGGcgcuGGCACCguAUCGACGcauccccGCgCGAGCa -3'
miRNA:   3'- uCCu---UCGUGGguUAGUUGU-------UG-GUUCG- -5'
30428 5' -48.7 NC_006548.1 + 27699 0.67 0.872985
Target:  5'- -uGGAGCugCuCAA-CAcCAGCCAAGCc -3'
miRNA:   3'- ucCUUCGugG-GUUaGUuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 26705 0.67 0.872985
Target:  5'- cGGAGGUGgCCAAgguUCGGCAGCaCGGGa -3'
miRNA:   3'- uCCUUCGUgGGUU---AGUUGUUG-GUUCg -5'
30428 5' -48.7 NC_006548.1 + 26140 0.67 0.872985
Target:  5'- uGGAAGUGCUCAacgacAUCAacgGCGACCuGGUc -3'
miRNA:   3'- uCCUUCGUGGGU-----UAGU---UGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 1078 0.67 0.872985
Target:  5'- uAGGggGCugcucagcaagAUCCAcaucgcucGUCAGCAGCUcGGCc -3'
miRNA:   3'- -UCCuuCG-----------UGGGU--------UAGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 35512 0.67 0.872985
Target:  5'- gAGcGggGUucaucgccuucACCUggUCGcCGGCCAGGCu -3'
miRNA:   3'- -UC-CuuCG-----------UGGGuuAGUuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7491 0.67 0.869558
Target:  5'- gAGGAGGUacgcaacgaguucgACCUgccugcagagcuuGGUC-GCGACCAGGCa -3'
miRNA:   3'- -UCCUUCG--------------UGGG-------------UUAGuUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 29858 0.67 0.864331
Target:  5'- cGGAugauGacuuCCCGAUCGGagAGCCAGGCa -3'
miRNA:   3'- uCCUu---Cgu--GGGUUAGUUg-UUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 10844 0.67 0.864331
Target:  5'- -aGAAGUACCCAuUCAucagGCAauagGCCAGGa -3'
miRNA:   3'- ucCUUCGUGGGUuAGU----UGU----UGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 33311 0.67 0.864331
Target:  5'- cGGGAAGCcaacccccGCCUggUCGGCAAauugcGGCa -3'
miRNA:   3'- -UCCUUCG--------UGGGuuAGUUGUUggu--UCG- -5'
30428 5' -48.7 NC_006548.1 + 15647 0.68 0.855393
Target:  5'- cGGGcuGCugCCAGUUAGCggUCu-GCg -3'
miRNA:   3'- -UCCuuCGugGGUUAGUUGuuGGuuCG- -5'
30428 5' -48.7 NC_006548.1 + 23042 0.68 0.846179
Target:  5'- uGGAuAGCACCCAggcugcucaGUUGcugccguuggguGCAAUCGAGCg -3'
miRNA:   3'- uCCU-UCGUGGGU---------UAGU------------UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 16617 0.68 0.846179
Target:  5'- uGGAAGCGaUCAaaGUCcGCAACCGucGGCg -3'
miRNA:   3'- uCCUUCGUgGGU--UAGuUGUUGGU--UCG- -5'
30428 5' -48.7 NC_006548.1 + 9000 0.68 0.846179
Target:  5'- gGGGucGAGCGCCUGgccAUCGACcACCuggGGCa -3'
miRNA:   3'- -UCC--UUCGUGGGU---UAGUUGuUGGu--UCG- -5'
30428 5' -48.7 NC_006548.1 + 33469 0.68 0.845244
Target:  5'- gAGGAcggagcuggucgcAGCACUguGUCGACcagcACCAGGUc -3'
miRNA:   3'- -UCCU-------------UCGUGGguUAGUUGu---UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 20060 0.68 0.836701
Target:  5'- uGGAGGUGCgCGA-CGGCAugcucuauGCCGAGCc -3'
miRNA:   3'- uCCUUCGUGgGUUaGUUGU--------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 9519 0.68 0.836701
Target:  5'- cAGGAGGCugCUcugguGcgCGuCGGCCAGGUg -3'
miRNA:   3'- -UCCUUCGugGG-----UuaGUuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 36610 0.68 0.836701
Target:  5'- cGGAAGaucucgucaUCGAUCAucGCGGCCGAGCc -3'
miRNA:   3'- uCCUUCgug------GGUUAGU--UGUUGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.