Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 2222 | 0.69 | 0.456928 |
Target: 5'- -uGUCGcUCCAgcaccugguaggcGUAGCCGgucagcuccggcGCCGCCGCg -3' miRNA: 3'- gcUAGCuAGGU-------------UAUCGGC------------CGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 17366 | 0.69 | 0.467139 |
Target: 5'- gGGUCGAaguugagUCCAcccaGGCCgaGGCCACgGCg -3' miRNA: 3'- gCUAGCU-------AGGUua--UCGG--CCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 24588 | 0.69 | 0.51017 |
Target: 5'- uCGAgggCGAUCUGAaAGCCGGCgACuuCGUg -3' miRNA: 3'- -GCUa--GCUAGGUUaUCGGCCGgUG--GCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 33757 | 0.69 | 0.51017 |
Target: 5'- gCGGUCGGUcgCCGAUGGCCaGGCgAUUaGCu -3' miRNA: 3'- -GCUAGCUA--GGUUAUCGG-CCGgUGG-CG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 36576 | 0.68 | 0.531758 |
Target: 5'- uCGAcgCGAUCaacgccgcGGCCGGC-ACCGCg -3' miRNA: 3'- -GCUa-GCUAGguua----UCGGCCGgUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 568 | 0.68 | 0.54158 |
Target: 5'- --uUCGGcagcuguUCCA--GGCCGGCCGCCu- -3' miRNA: 3'- gcuAGCU-------AGGUuaUCGGCCGGUGGcg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 29800 | 0.68 | 0.553666 |
Target: 5'- cCGAUCGGgaagucaucaUCC---GGgCGGCgGCCGCa -3' miRNA: 3'- -GCUAGCU----------AGGuuaUCgGCCGgUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 18516 | 0.67 | 0.598198 |
Target: 5'- -aGUCGGUUUgAAUGGCggUGGCCACCGa -3' miRNA: 3'- gcUAGCUAGG-UUAUCG--GCCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 20391 | 0.67 | 0.609429 |
Target: 5'- gGAucUCGGUCag--AGCC-GUCACCGCg -3' miRNA: 3'- gCU--AGCUAGguuaUCGGcCGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 6942 | 0.67 | 0.620681 |
Target: 5'- -uAUUGGcgCCGG-AGCCGGUCACCGa -3' miRNA: 3'- gcUAGCUa-GGUUaUCGGCCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 22179 | 0.67 | 0.63645 |
Target: 5'- aGAUCGcGUCCAGUuccAGCagcuccugcaggaaGGCCAUCGg -3' miRNA: 3'- gCUAGC-UAGGUUA---UCGg-------------CCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 14282 | 0.66 | 0.639828 |
Target: 5'- gGAccUGGUCCGGUAGCCGGgagaucgaugauuuCCGCCcCa -3' miRNA: 3'- gCUa-GCUAGGUUAUCGGCC--------------GGUGGcG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 11140 | 0.67 | 0.598198 |
Target: 5'- uGGUCGA-CCGAUGGuuG-CCGUCGCg -3' miRNA: 3'- gCUAGCUaGGUUAUCggCcGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 22407 | 0.67 | 0.586997 |
Target: 5'- uGAcCGAcucaCCGAcacggacgcGCUGGCCACCGCg -3' miRNA: 3'- gCUaGCUa---GGUUau-------CGGCCGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 23020 | 0.68 | 0.564722 |
Target: 5'- aCGAUgaagCGGUCCuugaGGCCGGCgGCC-Ca -3' miRNA: 3'- -GCUA----GCUAGGuua-UCGGCCGgUGGcG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 15222 | 0.7 | 0.437862 |
Target: 5'- gGAUgCG-UCCGccgcgcuuGCCGGCCugCGCg -3' miRNA: 3'- gCUA-GCuAGGUuau-----CGGCCGGugGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 33417 | 0.7 | 0.428013 |
Target: 5'- gGGUCGGaaUCCAGaucgcuuucuGCCGGCCAC-GCa -3' miRNA: 3'- gCUAGCU--AGGUUau--------CGGCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 28969 | 0.71 | 0.362922 |
Target: 5'- --cUCGAUCUcGgcGCCGGCCGCCu- -3' miRNA: 3'- gcuAGCUAGGuUauCGGCCGGUGGcg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 36656 | 0.73 | 0.305026 |
Target: 5'- cCGcgCGAgcaCCGcgGuGCCGGCCGCgGCg -3' miRNA: 3'- -GCuaGCUa--GGUuaU-CGGCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 29755 | 0.65 | 0.694706 |
Target: 5'- uGAUCGAggacagccagccgCCAcUA-CCGGCaGCCGCa -3' miRNA: 3'- gCUAGCUa------------GGUuAUcGGCCGgUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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