Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 33417 | 0.7 | 0.428013 |
Target: 5'- gGGUCGGaaUCCAGaucgcuuucuGCCGGCCAC-GCa -3' miRNA: 3'- gCUAGCU--AGGUUau--------CGGCCGGUGgCG- -5' |
|||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 15222 | 0.7 | 0.437862 |
Target: 5'- gGAUgCG-UCCGccgcgcuuGCCGGCCugCGCg -3' miRNA: 3'- gCUA-GCuAGGUuau-----CGGCCGGugGCG- -5' |
|||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 23020 | 0.68 | 0.564722 |
Target: 5'- aCGAUgaagCGGUCCuugaGGCCGGCgGCC-Ca -3' miRNA: 3'- -GCUA----GCUAGGuua-UCGGCCGgUGGcG- -5' |
|||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 22407 | 0.67 | 0.586997 |
Target: 5'- uGAcCGAcucaCCGAcacggacgcGCUGGCCACCGCg -3' miRNA: 3'- gCUaGCUa---GGUUau-------CGGCCGGUGGCG- -5' |
|||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 11140 | 0.67 | 0.598198 |
Target: 5'- uGGUCGA-CCGAUGGuuG-CCGUCGCg -3' miRNA: 3'- gCUAGCUaGGUUAUCggCcGGUGGCG- -5' |
|||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 29755 | 0.65 | 0.694706 |
Target: 5'- uGAUCGAggacagccagccgCCAcUA-CCGGCaGCCGCa -3' miRNA: 3'- gCUAGCUa------------GGUuAUcGGCCGgUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home