miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30429 3' -54.6 NC_006548.1 + 22361 0.66 0.676887
Target:  5'- -aGUCGGUCaaggaaCUGGUCACCGCa -3'
miRNA:   3'- gcUAGCUAGguuaucGGCCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 2222 0.69 0.456928
Target:  5'- -uGUCGcUCCAgcaccugguaggcGUAGCCGgucagcuccggcGCCGCCGCg -3'
miRNA:   3'- gcUAGCuAGGU-------------UAUCGGC------------CGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 32964 0.66 0.665689
Target:  5'- gCGccCGGUgCAGcggcgcUGGCCGGCCGgcucCCGCu -3'
miRNA:   3'- -GCuaGCUAgGUU------AUCGGCCGGU----GGCG- -5'
30429 3' -54.6 NC_006548.1 + 34730 0.66 0.643207
Target:  5'- gGAUCG-UCCucgGGaCCGGUCACgaGCg -3'
miRNA:   3'- gCUAGCuAGGuuaUC-GGCCGGUGg-CG- -5'
30429 3' -54.6 NC_006548.1 + 22306 0.67 0.631944
Target:  5'- uCGAUcgcCGAUCCGAacaUCGGUCugCGCg -3'
miRNA:   3'- -GCUA---GCUAGGUUaucGGCCGGugGCG- -5'
30429 3' -54.6 NC_006548.1 + 30589 0.7 0.418295
Target:  5'- ---aCGAUUUAcgAGUCGGCCGgCGCg -3'
miRNA:   3'- gcuaGCUAGGUuaUCGGCCGGUgGCG- -5'
30429 3' -54.6 NC_006548.1 + 17366 0.69 0.467139
Target:  5'- gGGUCGAaguugagUCCAcccaGGCCgaGGCCACgGCg -3'
miRNA:   3'- gCUAGCU-------AGGUua--UCGG--CCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 33757 0.69 0.51017
Target:  5'- gCGGUCGGUcgCCGAUGGCCaGGCgAUUaGCu -3'
miRNA:   3'- -GCUAGCUA--GGUUAUCGG-CCGgUGG-CG- -5'
30429 3' -54.6 NC_006548.1 + 36576 0.68 0.531758
Target:  5'- uCGAcgCGAUCaacgccgcGGCCGGC-ACCGCg -3'
miRNA:   3'- -GCUa-GCUAGguua----UCGGCCGgUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 568 0.68 0.54158
Target:  5'- --uUCGGcagcuguUCCA--GGCCGGCCGCCu- -3'
miRNA:   3'- gcuAGCU-------AGGUuaUCGGCCGGUGGcg -5'
30429 3' -54.6 NC_006548.1 + 29800 0.68 0.553666
Target:  5'- cCGAUCGGgaagucaucaUCC---GGgCGGCgGCCGCa -3'
miRNA:   3'- -GCUAGCU----------AGGuuaUCgGCCGgUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 29241 0.68 0.558081
Target:  5'- gCGAUCGAgcgcgugaaggaucUCCGccagcagcucgacaAUacccGGCUGGCCGCCGa -3'
miRNA:   3'- -GCUAGCU--------------AGGU--------------UA----UCGGCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 20873 0.68 0.564722
Target:  5'- cCGAgggCGAcggCCAGgucacaaAGCCGGCgGCCGa -3'
miRNA:   3'- -GCUa--GCUa--GGUUa------UCGGCCGgUGGCg -5'
30429 3' -54.6 NC_006548.1 + 16257 0.68 0.564722
Target:  5'- aGAUCGccaCCAGUGGCgaCGGCCGCg-- -3'
miRNA:   3'- gCUAGCua-GGUUAUCG--GCCGGUGgcg -5'
30429 3' -54.6 NC_006548.1 + 12135 0.67 0.575835
Target:  5'- cCGAUgaGAUCCc---GCgGGCCGCCGa -3'
miRNA:   3'- -GCUAg-CUAGGuuauCGgCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 19523 0.67 0.586997
Target:  5'- aGAUCGGacccuacacaaUCCAGaugccGGCuCGGCCAUgGCu -3'
miRNA:   3'- gCUAGCU-----------AGGUUa----UCG-GCCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 20782 0.67 0.586997
Target:  5'- ---cUGGUCaa--GGCCGGCCGCCuGCu -3'
miRNA:   3'- gcuaGCUAGguuaUCGGCCGGUGG-CG- -5'
30429 3' -54.6 NC_006548.1 + 20687 0.67 0.598198
Target:  5'- aCGAgcgCGAg-CAAcuGCUGGCCACcCGCg -3'
miRNA:   3'- -GCUa--GCUagGUUauCGGCCGGUG-GCG- -5'
30429 3' -54.6 NC_006548.1 + 12327 0.67 0.620681
Target:  5'- gGAUCGccggCCuGUAuCCGGCCGCCcucgGCa -3'
miRNA:   3'- gCUAGCua--GGuUAUcGGCCGGUGG----CG- -5'
30429 3' -54.6 NC_006548.1 + 5643 0.67 0.631944
Target:  5'- gGGUgGGUCUucuugAGCCaGGCCAUCGa -3'
miRNA:   3'- gCUAgCUAGGuua--UCGG-CCGGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.