Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 28892 | 0.73 | 0.235193 |
|
Target: 5'- cCACCGGccaaacCGUcgaGGCGGcCGGCGCCGAg -3' miRNA: 3'- cGUGGCUu-----GCA---UCGCUaGCCGCGGCU- -5' |
|||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 33729 | 0.73 | 0.231503 |
|
Target: 5'- aGUACgCGAugagcuucagugaucGCG-AGCGGUCGGuCGCCGAu -3' miRNA: 3'- -CGUG-GCU---------------UGCaUCGCUAGCC-GCGGCU- -5' |
|||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 5132 | 0.75 | 0.189901 |
|
Target: 5'- uCGCCucgcGGACGUAGCGAaugUCGGgGCUGAc -3' miRNA: 3'- cGUGG----CUUGCAUCGCU---AGCCgCGGCU- -5' |
|||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 34749 | 0.75 | 0.174992 |
|
Target: 5'- uCGCCGAagaucACGUAGUGGcCGGUGCCGu -3' miRNA: 3'- cGUGGCU-----UGCAUCGCUaGCCGCGGCu -5' |
|||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 6688 | 0.75 | 0.16564 |
|
Target: 5'- gGCGCCGAGaGUGGCGAgaacuucugcaCGGUGCUGAu -3' miRNA: 3'- -CGUGGCUUgCAUCGCUa----------GCCGCGGCU- -5' |
|||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 4764 | 0.77 | 0.136354 |
|
Target: 5'- gGCGCUucaggugcuuGAGCGUGGCGAUCGGCagGCUGu -3' miRNA: 3'- -CGUGG----------CUUGCAUCGCUAGCCG--CGGCu -5' |
|||||||
| 30430 | 5' | -56.1 | NC_006548.1 | + | 12273 | 1.11 | 0.000473 |
|
Target: 5'- aGCACCGAACGUAGCGAUCGGCGCCGAc -3' miRNA: 3'- -CGUGGCUUGCAUCGCUAGCCGCGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home