miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 14473 0.7 0.121227
Target:  5'- cAGCUUgGCCGCC-UCgGUGCuGGCACg -3'
miRNA:   3'- -UCGAA-CGGCGGcGGgCGCGuCCGUGg -5'
30431 3' -63.7 NC_006548.1 + 14641 0.7 0.111628
Target:  5'- aGGCagagGCCGaggaaCGCgCGCGcCAGGCGCUg -3'
miRNA:   3'- -UCGaa--CGGCg----GCGgGCGC-GUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 14930 0.66 0.241644
Target:  5'- gAGCgcacUGCUGCCgaGUCCGCGCgaguggaucaauGGGUagcaGCCg -3'
miRNA:   3'- -UCGa---ACGGCGG--CGGGCGCG------------UCCG----UGG- -5'
30431 3' -63.7 NC_006548.1 + 15208 0.7 0.121227
Target:  5'- cGCUUGCCG--GCCUGCGCguccGGGUugCu -3'
miRNA:   3'- uCGAACGGCggCGGGCGCG----UCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 16717 0.69 0.138943
Target:  5'- aGGCgcagGCCGCCGUCCuggucauaGCGgAaGCGCCg -3'
miRNA:   3'- -UCGaa--CGGCGGCGGG--------CGCgUcCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 18079 0.66 0.235569
Target:  5'- cAGCgaUGCCGUCGaacaucCCCGCGaacuGCACCu -3'
miRNA:   3'- -UCGa-ACGGCGGC------GGGCGCguc-CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 18273 0.72 0.08694
Target:  5'- cAGCgaUGCCaGCuCGUccuCCGCGUAGGCGCUg -3'
miRNA:   3'- -UCGa-ACGG-CG-GCG---GGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 18704 0.67 0.195538
Target:  5'- gAGCUagcgacccUGCCGCagauccuCGCCCaGcCGCAGGCcgugcugcucgacGCCa -3'
miRNA:   3'- -UCGA--------ACGGCG-------GCGGG-C-GCGUCCG-------------UGG- -5'
30431 3' -63.7 NC_006548.1 + 18966 0.67 0.196565
Target:  5'- ----cGCCaCCuccaCCGUGCAGGCGCCa -3'
miRNA:   3'- ucgaaCGGcGGcg--GGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 19184 0.67 0.196565
Target:  5'- cAGCgcUG-CGCUGCCCGCGUuGaGCACg -3'
miRNA:   3'- -UCGa-ACgGCGGCGGGCGCGuC-CGUGg -5'
30431 3' -63.7 NC_006548.1 + 19397 0.71 0.089403
Target:  5'- cAGCUcGCUGCCGUCCaGCugguagcgcaGCAGGUugCg -3'
miRNA:   3'- -UCGAaCGGCGGCGGG-CG----------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 20175 0.66 0.229623
Target:  5'- -uCUUGCgguuCGCCGCCUcgGCGaacuccGGCACCa -3'
miRNA:   3'- ucGAACG----GCGGCGGG--CGCgu----CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 20528 0.72 0.075563
Target:  5'- cAGCcucUGCCGCCGCugcggaagagCCGCa-GGGCACCg -3'
miRNA:   3'- -UCGa--ACGGCGGCG----------GGCGcgUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 20789 0.7 0.117945
Target:  5'- aGGCcgGCCGCCuGCugCCGCGCcagaAGGCuCCg -3'
miRNA:   3'- -UCGaaCGGCGG-CG--GGCGCG----UCCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 21089 0.66 0.210895
Target:  5'- cAGCcUGCCGCUGUucuuccugauagcuCUGCGCucGCGCUg -3'
miRNA:   3'- -UCGaACGGCGGCG--------------GGCGCGucCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 22537 0.66 0.235569
Target:  5'- cGGC--GCacaGCCGCCgGCGgAGGagaGCCu -3'
miRNA:   3'- -UCGaaCGg--CGGCGGgCGCgUCCg--UGG- -5'
30431 3' -63.7 NC_006548.1 + 22700 0.66 0.218111
Target:  5'- cAGCUcGUCGCUGCCauucagGCGCAGaaggugcucGUGCCg -3'
miRNA:   3'- -UCGAaCGGCGGCGGg-----CGCGUC---------CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 23221 0.66 0.217549
Target:  5'- aGGCcgaggUGuaGCCGCuuGCGaCAacuccucGGCACCa -3'
miRNA:   3'- -UCGa----ACggCGGCGggCGC-GU-------CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 23952 0.69 0.146673
Target:  5'- cGCUggacaCCGCCcgGCCUG-GCAGGCGCUc -3'
miRNA:   3'- uCGAac---GGCGG--CGGGCgCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 25256 0.68 0.154378
Target:  5'- aGGCUUGCCGCCGCUgGauCGgaucaucGGCGuCCu -3'
miRNA:   3'- -UCGAACGGCGGCGGgCgcGU-------CCGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.