miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 21089 0.66 0.210895
Target:  5'- cAGCcUGCCGCUGUucuuccugauagcuCUGCGCucGCGCUg -3'
miRNA:   3'- -UCGaACGGCGGCG--------------GGCGCGucCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 28129 0.66 0.212542
Target:  5'- aGGCc-GCCaGCCGCCUGCuGUgAGGCuggACCa -3'
miRNA:   3'- -UCGaaCGG-CGGCGGGCG-CG-UCCG---UGG- -5'
30431 3' -63.7 NC_006548.1 + 23221 0.66 0.217549
Target:  5'- aGGCcgaggUGuaGCCGCuuGCGaCAacuccucGGCACCa -3'
miRNA:   3'- -UCGa----ACggCGGCGggCGC-GU-------CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 36700 0.66 0.223804
Target:  5'- ----aGCgCGCCgGCCUcaugcgGCGCuGGCACCg -3'
miRNA:   3'- ucgaaCG-GCGG-CGGG------CGCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 32876 0.66 0.223804
Target:  5'- cGUUUGUgCGCCGgCCGCGguGaCGCUu -3'
miRNA:   3'- uCGAACG-GCGGCgGGCGCguCcGUGG- -5'
30431 3' -63.7 NC_006548.1 + 20175 0.66 0.229623
Target:  5'- -uCUUGCgguuCGCCGCCUcgGCGaacuccGGCACCa -3'
miRNA:   3'- ucGAACG----GCGGCGGG--CGCgu----CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 2334 0.66 0.241031
Target:  5'- cGCUucguuccUGuUCGUCGgCUGCGCGgcGGCGCCg -3'
miRNA:   3'- uCGA-------AC-GGCGGCgGGCGCGU--CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 36340 0.67 0.176901
Target:  5'- cGCUcagUGCCGCCGCgagaucaCG-GUAcGGCGCCu -3'
miRNA:   3'- uCGA---ACGGCGGCGg------GCgCGU-CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 13005 0.67 0.176901
Target:  5'- cGGCUgcGCCGCacaGCaCCGCGCucaGCGCg -3'
miRNA:   3'- -UCGAa-CGGCGg--CG-GGCGCGuc-CGUGg -5'
30431 3' -63.7 NC_006548.1 + 29977 0.68 0.172266
Target:  5'- uGGCUaUGCCGcCCGUCgCGUGCcgcacaGCGCCg -3'
miRNA:   3'- -UCGA-ACGGC-GGCGG-GCGCGuc----CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 27269 0.68 0.167739
Target:  5'- uGCUcgGUCGCCGCCUGCuggacGCGaGCACg -3'
miRNA:   3'- uCGAa-CGGCGGCGGGCG-----CGUcCGUGg -5'
30431 3' -63.7 NC_006548.1 + 16717 0.69 0.138943
Target:  5'- aGGCgcagGCCGCCGUCCuggucauaGCGgAaGCGCCg -3'
miRNA:   3'- -UCGaa--CGGCGGCGGG--------CGCgUcCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 12884 0.69 0.128046
Target:  5'- cGGaCUUaCCgcGCCGCUCGCGC-GGCACUg -3'
miRNA:   3'- -UC-GAAcGG--CGGCGGGCGCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 14473 0.7 0.121227
Target:  5'- cAGCUUgGCCGCC-UCgGUGCuGGCACg -3'
miRNA:   3'- -UCGAA-CGGCGGcGGgCGCGuCCGUGg -5'
30431 3' -63.7 NC_006548.1 + 15208 0.7 0.121227
Target:  5'- cGCUUGCCG--GCCUGCGCguccGGGUugCu -3'
miRNA:   3'- uCGAACGGCggCGGGCGCG----UCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 2006 0.7 0.10859
Target:  5'- gGGUaUGCCGCgggcaaGCgCGCGCGGcuGCACCa -3'
miRNA:   3'- -UCGaACGGCGg-----CGgGCGCGUC--CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 30402 0.7 0.10859
Target:  5'- uGGCgucggUGCCGCCcagGCCaggggCGCGCAGaGuCACCu -3'
miRNA:   3'- -UCGa----ACGGCGG---CGG-----GCGCGUC-C-GUGG- -5'
30431 3' -63.7 NC_006548.1 + 19397 0.71 0.089403
Target:  5'- cAGCUcGCUGCCGUCCaGCugguagcgcaGCAGGUugCg -3'
miRNA:   3'- -UCGAaCGGCGGCGGG-CG----------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 18273 0.72 0.08694
Target:  5'- cAGCgaUGCCaGCuCGUccuCCGCGUAGGCGCUg -3'
miRNA:   3'- -UCGa-ACGG-CG-GCG---GGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 25427 0.76 0.038173
Target:  5'- -cCUUGCCagGCCGUgCGCGCAGGC-CCu -3'
miRNA:   3'- ucGAACGG--CGGCGgGCGCGUCCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.