miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 5' -52.6 NC_006548.1 + 38328 0.66 0.727722
Target:  5'- aUCGGCcacccgcucAGaCAGAGcGGUCAGCuUGCCGa -3'
miRNA:   3'- -AGUCG---------UC-GUCUCaCUAGUUG-ACGGUg -5'
30431 5' -52.6 NC_006548.1 + 23781 0.66 0.727722
Target:  5'- --cGCAGUuGGGUGAUCG--UGCCAa -3'
miRNA:   3'- aguCGUCGuCUCACUAGUugACGGUg -5'
30431 5' -52.6 NC_006548.1 + 35947 0.66 0.704917
Target:  5'- gUUGGcCGGCAGGGUGGcggcgcgCGACUGCaACg -3'
miRNA:   3'- -AGUC-GUCGUCUCACUa------GUUGACGgUG- -5'
30431 5' -52.6 NC_006548.1 + 16481 0.66 0.693386
Target:  5'- gCuGCGGCAGAGcaccugGAgcagCAGCUGCaGCg -3'
miRNA:   3'- aGuCGUCGUCUCa-----CUa---GUUGACGgUG- -5'
30431 5' -52.6 NC_006548.1 + 8821 0.66 0.693386
Target:  5'- -aGGUAGC-GuGUGAUCAGCggaaUGCCAg -3'
miRNA:   3'- agUCGUCGuCuCACUAGUUG----ACGGUg -5'
30431 5' -52.6 NC_006548.1 + 6500 0.66 0.681788
Target:  5'- -gAGCAGCAGAGguucuUCGACaucGCCGa -3'
miRNA:   3'- agUCGUCGUCUCacu--AGUUGa--CGGUg -5'
30431 5' -52.6 NC_006548.1 + 34325 0.66 0.681788
Target:  5'- aCAGCGGUcagGGAGUGAUugagCAGC-GCgGCa -3'
miRNA:   3'- aGUCGUCG---UCUCACUA----GUUGaCGgUG- -5'
30431 5' -52.6 NC_006548.1 + 33428 0.67 0.62325
Target:  5'- gUCGGCGGCAuGGGUcggaauccaGAUCGcuuuCUGCCGg -3'
miRNA:   3'- -AGUCGUCGU-CUCA---------CUAGUu---GACGGUg -5'
30431 5' -52.6 NC_006548.1 + 21428 0.68 0.576497
Target:  5'- cCGGCGGCAGAGUcgcggCAACcGCuCGCc -3'
miRNA:   3'- aGUCGUCGUCUCAcua--GUUGaCG-GUG- -5'
30431 5' -52.6 NC_006548.1 + 23171 0.69 0.553392
Target:  5'- cCAGCuccGGCAGcGUGAUguACacgGCCACu -3'
miRNA:   3'- aGUCG---UCGUCuCACUAguUGa--CGGUG- -5'
30431 5' -52.6 NC_006548.1 + 11396 0.69 0.5081
Target:  5'- -gAGCGGguGuGuUGAUCAAuCUGCCAa -3'
miRNA:   3'- agUCGUCguCuC-ACUAGUU-GACGGUg -5'
30431 5' -52.6 NC_006548.1 + 1480 0.69 0.497016
Target:  5'- cCGGCAGUGGAGUGGUagcGCU-CCAUg -3'
miRNA:   3'- aGUCGUCGUCUCACUAgu-UGAcGGUG- -5'
30431 5' -52.6 NC_006548.1 + 27161 0.69 0.497016
Target:  5'- aCAGCAGCAuuGAGgcgcUGcgUAcugGCUGCCGCa -3'
miRNA:   3'- aGUCGUCGU--CUC----ACuaGU---UGACGGUG- -5'
30431 5' -52.6 NC_006548.1 + 18444 0.7 0.475186
Target:  5'- -uGGCAGCGGcGUGGUCuuCUGCaggGCg -3'
miRNA:   3'- agUCGUCGUCuCACUAGuuGACGg--UG- -5'
30431 5' -52.6 NC_006548.1 + 22543 0.7 0.442329
Target:  5'- aCAGCcgccGGCGGAGgagagccUGAUCGACgGCCAa -3'
miRNA:   3'- aGUCG----UCGUCUC-------ACUAGUUGaCGGUg -5'
30431 5' -52.6 NC_006548.1 + 29218 0.71 0.422837
Target:  5'- gUCGGCGGUAGAccGAUgCAggucuagcaguuGCUGCCGCg -3'
miRNA:   3'- -AGUCGUCGUCUcaCUA-GU------------UGACGGUG- -5'
30431 5' -52.6 NC_006548.1 + 20580 0.71 0.422837
Target:  5'- gCGGCGGCAGAGg---CuGCUGCgGCg -3'
miRNA:   3'- aGUCGUCGUCUCacuaGuUGACGgUG- -5'
30431 5' -52.6 NC_006548.1 + 27306 0.71 0.393138
Target:  5'- uUCAGCAGCAGcc---UUGGCUGCCGCc -3'
miRNA:   3'- -AGUCGUCGUCucacuAGUUGACGGUG- -5'
30431 5' -52.6 NC_006548.1 + 13593 1.11 0.000614
Target:  5'- gUCAGCAGCAGAGUGAUCAACUGCCACa -3'
miRNA:   3'- -AGUCGUCGUCUCACUAGUUGACGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.