Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30433 | 3' | -65.2 | NC_006548.1 | + | 22420 | 0.68 | 0.149356 |
Target: 5'- gCGGCUuaauCCUCaacUGGGCGgCCGCUcuGGCCg -3' miRNA: 3'- -GCCGG----GGAGc--AUCCGCgGGUGG--CCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 23777 | 0.67 | 0.165854 |
Target: 5'- uGGCCCaggagacucuCUCacccaaGCCCGCCGGCCa -3' miRNA: 3'- gCCGGG----------GAGcauccgCGGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 24403 | 0.78 | 0.024244 |
Target: 5'- cCGGCCUgCUCaGUuugccauugggcAGGCGCUCGCCGGCCc -3' miRNA: 3'- -GCCGGG-GAG-CA------------UCCGCGGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 29648 | 0.66 | 0.22548 |
Target: 5'- gCGGCuCCCUgaauGGCaGCCgCACCaGCCa -3' miRNA: 3'- -GCCG-GGGAgcauCCG-CGG-GUGGcCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 30036 | 0.66 | 0.209052 |
Target: 5'- aGG-CUCUUGUAGGCGCgaagcaGCCaGGCCc -3' miRNA: 3'- gCCgGGGAGCAUCCGCGgg----UGG-CCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 30669 | 0.67 | 0.183969 |
Target: 5'- gGGCUCCUacCGU-GGCGacguugcaaCCCGCUGGUCc -3' miRNA: 3'- gCCGGGGA--GCAuCCGC---------GGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 32960 | 0.69 | 0.12077 |
Target: 5'- uGGCgcgCCCg-GUGcagcGGCGCUgGCCGGCCg -3' miRNA: 3'- gCCG---GGGagCAU----CCGCGGgUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 33217 | 0.7 | 0.111425 |
Target: 5'- uCGGaCUCCUCGggccGCuGCCCgagcACCGGCCa -3' miRNA: 3'- -GCC-GGGGAGCauc-CG-CGGG----UGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 36180 | 0.71 | 0.085883 |
Target: 5'- gGuGCCCCUCGUgaGGGUGCCauagucgaucuuuCCGGCg -3' miRNA: 3'- gC-CGGGGAGCA--UCCGCGGgu-----------GGCCGg -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 36334 | 0.68 | 0.149356 |
Target: 5'- aGGCaUCCUCGcugcgcUGGGCaugcgGCCguCCGGCCu -3' miRNA: 3'- gCCG-GGGAGC------AUCCG-----CGGguGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 36876 | 0.68 | 0.149356 |
Target: 5'- aCGGUgugcugaCCgugUCGUGGGCGCaCCgcaACCGGCUg -3' miRNA: 3'- -GCCGg------GG---AGCAUCCGCG-GG---UGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 37404 | 0.66 | 0.224915 |
Target: 5'- uGGCCgCUagucggcagCGUGGcgacGCGCCCcuugacgACCGGCUg -3' miRNA: 3'- gCCGGgGA---------GCAUC----CGCGGG-------UGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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