Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30433 | 3' | -65.2 | NC_006548.1 | + | 12977 | 0.74 | 0.05 |
Target: 5'- aCGGCUCCgcaagcuacgacCGUGGGUaCgCCACCGGCCg -3' miRNA: 3'- -GCCGGGGa-----------GCAUCCGcG-GGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 15760 | 0.66 | 0.224915 |
Target: 5'- uGGCCCUgguuccagcgcUGUGaGCGCaucugcaucgacgCCACCGGCCu -3' miRNA: 3'- gCCGGGGa----------GCAUcCGCG-------------GGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 12519 | 0.66 | 0.21441 |
Target: 5'- uGGCCUCggcauccGGCGCCgaccaGCUGGCCu -3' miRNA: 3'- gCCGGGGagcau--CCGCGGg----UGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 22070 | 0.66 | 0.200719 |
Target: 5'- aCGGCuCCCUCGgcgacgagggcauGGUGCCgAU-GGCCu -3' miRNA: 3'- -GCCG-GGGAGCau-----------CCGCGGgUGgCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 2866 | 0.67 | 0.19566 |
Target: 5'- uGGCCgCCU-GcAGGCGCUCGucgaaggcgauguugUCGGCCa -3' miRNA: 3'- gCCGG-GGAgCaUCCGCGGGU---------------GGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 30669 | 0.67 | 0.183969 |
Target: 5'- gGGCUCCUacCGU-GGCGacguugcaaCCCGCUGGUCc -3' miRNA: 3'- gCCGGGGA--GCAuCCGC---------GGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 23777 | 0.67 | 0.165854 |
Target: 5'- uGGCCCaggagacucuCUCacccaaGCCCGCCGGCCa -3' miRNA: 3'- gCCGGG----------GAGcauccgCGGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 36876 | 0.68 | 0.149356 |
Target: 5'- aCGGUgugcugaCCgugUCGUGGGCGCaCCgcaACCGGCUg -3' miRNA: 3'- -GCCGg------GG---AGCAUCCGCG-GG---UGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 22420 | 0.68 | 0.149356 |
Target: 5'- gCGGCUuaauCCUCaacUGGGCGgCCGCUcuGGCCg -3' miRNA: 3'- -GCCGG----GGAGc--AUCCGCgGGUGG--CCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 14245 | 0.69 | 0.12077 |
Target: 5'- gGGCCUacaUCGagGGGCGCCUgGCCgauGGCCg -3' miRNA: 3'- gCCGGGg--AGCa-UCCGCGGG-UGG---CCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 20219 | 0.69 | 0.12077 |
Target: 5'- uCGGCuUCCUCGgugccGUG-CCGCCGGCCa -3' miRNA: 3'- -GCCG-GGGAGCauc--CGCgGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 32960 | 0.69 | 0.12077 |
Target: 5'- uGGCgcgCCCg-GUGcagcGGCGCUgGCCGGCCg -3' miRNA: 3'- gCCG---GGGagCAU----CCGCGGgUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 11881 | 0.68 | 0.145471 |
Target: 5'- uCGGCCaaCCuggaggUCGUAGGUGCCUgGCUGcGCCg -3' miRNA: 3'- -GCCGG--GG------AGCAUCCGCGGG-UGGC-CGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 36334 | 0.68 | 0.149356 |
Target: 5'- aGGCaUCCUCGcugcgcUGGGCaugcgGCCguCCGGCCu -3' miRNA: 3'- gCCG-GGGAGC------AUCCG-----CGGguGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 19997 | 0.68 | 0.149356 |
Target: 5'- aGGCCCCgcUCGUcaucGGCcacCCCaagcucaaugcGCCGGCCu -3' miRNA: 3'- gCCGGGG--AGCAu---CCGc--GGG-----------UGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 7795 | 0.66 | 0.226046 |
Target: 5'- aGGCUcugcgcgaccuCCgcgaggacaaggaagCGcagGGGCGCCUGCUGGCCa -3' miRNA: 3'- gCCGG-----------GGa--------------GCa--UCCGCGGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 24403 | 0.78 | 0.024244 |
Target: 5'- cCGGCCUgCUCaGUuugccauugggcAGGCGCUCGCCGGCCc -3' miRNA: 3'- -GCCGGG-GAG-CA------------UCCGCGGGUGGCCGG- -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 13740 | 0.71 | 0.08495 |
Target: 5'- gCGGCCUgCUCGauGGCGUCCAgCCGGUa -3' miRNA: 3'- -GCCGGG-GAGCauCCGCGGGU-GGCCGg -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 36180 | 0.71 | 0.085883 |
Target: 5'- gGuGCCCCUCGUgaGGGUGCCauagucgaucuuuCCGGCg -3' miRNA: 3'- gC-CGGGGAGCA--UCCGCGGgu-----------GGCCGg -5' |
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30433 | 3' | -65.2 | NC_006548.1 | + | 33217 | 0.7 | 0.111425 |
Target: 5'- uCGGaCUCCUCGggccGCuGCCCgagcACCGGCCa -3' miRNA: 3'- -GCC-GGGGAGCauc-CG-CGGG----UGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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