miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30434 3' -51.5 NC_006548.1 + 14254 0.66 0.833465
Target:  5'- uCGAGg-GGCGccuGGCCGaugGCCGGAUGa -3'
miRNA:   3'- -GUUUagCCGC---UUGGUgaaCGGCCUAC- -5'
30434 3' -51.5 NC_006548.1 + 1420 0.66 0.814137
Target:  5'- aAAGUCGGguacaaGAugCGCgagcUGCCGGAc- -3'
miRNA:   3'- gUUUAGCCg-----CUugGUGa---ACGGCCUac -5'
30434 3' -51.5 NC_006548.1 + 23895 0.66 0.793956
Target:  5'- ----aUGGCGAagugcacguuuGCCAUcUGCCGGGUc -3'
miRNA:   3'- guuuaGCCGCU-----------UGGUGaACGGCCUAc -5'
30434 3' -51.5 NC_006548.1 + 31140 0.66 0.793956
Target:  5'- ----gCGuaGAGCCACggguUGCCGGAg- -3'
miRNA:   3'- guuuaGCcgCUUGGUGa---ACGGCCUac -5'
30434 3' -51.5 NC_006548.1 + 33432 0.66 0.783577
Target:  5'- cCAGGUCGGCGG--CAUggGUCGGAa- -3'
miRNA:   3'- -GUUUAGCCGCUugGUGaaCGGCCUac -5'
30434 3' -51.5 NC_006548.1 + 29340 0.67 0.751438
Target:  5'- -uGGUCGGCG-GCCA---GCCGGGUa -3'
miRNA:   3'- guUUAGCCGCuUGGUgaaCGGCCUAc -5'
30434 3' -51.5 NC_006548.1 + 22143 0.68 0.716951
Target:  5'- --cAUCGGCGAagcgcggcugaacAUCGCUcgGCCGGGg- -3'
miRNA:   3'- guuUAGCCGCU-------------UGGUGAa-CGGCCUac -5'
30434 3' -51.5 NC_006548.1 + 850 0.69 0.649157
Target:  5'- ----cCGGCGGcUCGCUUGCUGGGc- -3'
miRNA:   3'- guuuaGCCGCUuGGUGAACGGCCUac -5'
30434 3' -51.5 NC_006548.1 + 21536 0.72 0.457746
Target:  5'- ----aCGGCGAucgccaucgccuACCGCaacgGCCGGAUGa -3'
miRNA:   3'- guuuaGCCGCU------------UGGUGaa--CGGCCUAC- -5'
30434 3' -51.5 NC_006548.1 + 31869 0.76 0.273235
Target:  5'- --cAUCGGCGAAgCGCcugauuucggucugUGCCGGAUGg -3'
miRNA:   3'- guuUAGCCGCUUgGUGa-------------ACGGCCUAC- -5'
30434 3' -51.5 NC_006548.1 + 4467 0.77 0.242488
Target:  5'- gCAuGUCGGCGAACCGCUcgucacUGCCG-AUGu -3'
miRNA:   3'- -GUuUAGCCGCUUGGUGA------ACGGCcUAC- -5'
30434 3' -51.5 NC_006548.1 + 14157 1.09 0.001461
Target:  5'- uCAAAUCGGCGAACCACUUGCCGGAUGg -3'
miRNA:   3'- -GUUUAGCCGCUUGGUGAACGGCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.