miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30434 5' -56.8 NC_006548.1 + 28238 0.66 0.525971
Target:  5'- aUCACgCAGGUCuCGcaCGGCCuGAGUGa -3'
miRNA:   3'- cAGUG-GUCCAGuGCcaGCCGG-UUCAU- -5'
30434 5' -56.8 NC_006548.1 + 18109 0.66 0.515157
Target:  5'- -gCACCuGGcCugGGaCGGCCuGGUGa -3'
miRNA:   3'- caGUGGuCCaGugCCaGCCGGuUCAU- -5'
30434 5' -56.8 NC_006548.1 + 24314 0.66 0.504433
Target:  5'- --gGCCGGGUCugGGcCGGCgAGc-- -3'
miRNA:   3'- cagUGGUCCAGugCCaGCCGgUUcau -5'
30434 5' -56.8 NC_006548.1 + 35495 0.66 0.504433
Target:  5'- uUCACCuGGUCGC---CGGCCAGGc- -3'
miRNA:   3'- cAGUGGuCCAGUGccaGCCGGUUCau -5'
30434 5' -56.8 NC_006548.1 + 16315 0.66 0.472872
Target:  5'- cGUCGCCAcuGGUgGCGaucuccCGGCCAAGg- -3'
miRNA:   3'- -CAGUGGU--CCAgUGCca----GCCGGUUCau -5'
30434 5' -56.8 NC_006548.1 + 30287 0.67 0.442336
Target:  5'- --gACCAGGUCugGGUucgCGGUgAGGa- -3'
miRNA:   3'- cagUGGUCCAGugCCA---GCCGgUUCau -5'
30434 5' -56.8 NC_006548.1 + 9512 0.67 0.436363
Target:  5'- -cCACCAgcaggaggcugcucuGGU-GCGcGUCGGCCAGGUGc -3'
miRNA:   3'- caGUGGU---------------CCAgUGC-CAGCCGGUUCAU- -5'
30434 5' -56.8 NC_006548.1 + 36808 0.67 0.432407
Target:  5'- -gCGCCAGG-CGCGGcCuuaugcgccuGGCCGGGUGc -3'
miRNA:   3'- caGUGGUCCaGUGCCaG----------CCGGUUCAU- -5'
30434 5' -56.8 NC_006548.1 + 25155 0.67 0.431422
Target:  5'- aUCugCAGGUCAuccgccccuggauCGGU-GGCCGGGg- -3'
miRNA:   3'- cAGugGUCCAGU-------------GCCAgCCGGUUCau -5'
30434 5' -56.8 NC_006548.1 + 17197 0.68 0.403421
Target:  5'- uUCACCAGGUCAaGGcgaacaUCGGCCu---- -3'
miRNA:   3'- cAGUGGUCCAGUgCC------AGCCGGuucau -5'
30434 5' -56.8 NC_006548.1 + 20884 0.72 0.225111
Target:  5'- --gGCCAGGUCAcaaagcCGG-CGGCCGAGg- -3'
miRNA:   3'- cagUGGUCCAGU------GCCaGCCGGUUCau -5'
30434 5' -56.8 NC_006548.1 + 17059 0.76 0.105398
Target:  5'- aUCGCCaAGGUCG-GGcUCGGCCAGGUGg -3'
miRNA:   3'- cAGUGG-UCCAGUgCC-AGCCGGUUCAU- -5'
30434 5' -56.8 NC_006548.1 + 14117 1.06 0.000604
Target:  5'- gGUCACCAGGUCACGGUCGGCCAAGUAg -3'
miRNA:   3'- -CAGUGGUCCAGUGCCAGCCGGUUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.