miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30435 5' -62.5 NC_006548.1 + 36260 0.66 0.292924
Target:  5'- gGGGUccAGUUCGgCGGCUggacugcggacguccCGGCUgccGGCa -3'
miRNA:   3'- -CCCG--UCGAGCgGCCGAa--------------GCCGGa--CCG- -5'
30435 5' -62.5 NC_006548.1 + 21204 0.66 0.292207
Target:  5'- cGGGCGGCgauggcgcCGCUGGCac--GUUUGGCg -3'
miRNA:   3'- -CCCGUCGa-------GCGGCCGaagcCGGACCG- -5'
30435 5' -62.5 NC_006548.1 + 36334 0.66 0.292207
Target:  5'- aGGCAucCUCGCUGcGCUgggcaugCGGCCguccGGCc -3'
miRNA:   3'- cCCGUc-GAGCGGC-CGAa------GCCGGa---CCG- -5'
30435 5' -62.5 NC_006548.1 + 35928 0.66 0.292207
Target:  5'- cGGGCcuacCGaCCGGCgagUUGGCC-GGCa -3'
miRNA:   3'- -CCCGucgaGC-GGCCGa--AGCCGGaCCG- -5'
30435 5' -62.5 NC_006548.1 + 29926 0.66 0.29149
Target:  5'- cGGGCGGCauagccacauUCccgcacccgcaauGCCuGCUcCgGGCCUGGCu -3'
miRNA:   3'- -CCCGUCG----------AG-------------CGGcCGAaG-CCGGACCG- -5'
30435 5' -62.5 NC_006548.1 + 4474 0.66 0.285106
Target:  5'- cGGGUAGa--GCUGGCUcgucuugucgCGGCCgcUGGUg -3'
miRNA:   3'- -CCCGUCgagCGGCCGAa---------GCCGG--ACCG- -5'
30435 5' -62.5 NC_006548.1 + 28954 0.66 0.280911
Target:  5'- -aGCGucuGCUCGCCacgggugacaccgaaGGCgcUGGCCUGGUc -3'
miRNA:   3'- ccCGU---CGAGCGG---------------CCGaaGCCGGACCG- -5'
30435 5' -62.5 NC_006548.1 + 5475 0.66 0.271314
Target:  5'- cGGGCucAGgUCGaCCGcucgaGCcaggUCGGCCUGGg -3'
miRNA:   3'- -CCCG--UCgAGC-GGC-----CGa---AGCCGGACCg -5'
30435 5' -62.5 NC_006548.1 + 5315 0.66 0.271314
Target:  5'- cGGCguuGGCgCGCCGGggcuccacuuCUUCaaauGCCUGGCg -3'
miRNA:   3'- cCCG---UCGaGCGGCC----------GAAGc---CGGACCG- -5'
30435 5' -62.5 NC_006548.1 + 36009 0.66 0.271314
Target:  5'- aGGuGCGGCUCGaUCGGCgcgccuaugCGcugaacCCUGGCg -3'
miRNA:   3'- -CC-CGUCGAGC-GGCCGaa-------GCc-----GGACCG- -5'
30435 5' -62.5 NC_006548.1 + 35557 0.66 0.269965
Target:  5'- aGGCcgcagauacguuGUUCGCCgagGGCUUUGGUCUGuGCc -3'
miRNA:   3'- cCCGu-----------CGAGCGG---CCGAAGCCGGAC-CG- -5'
30435 5' -62.5 NC_006548.1 + 19542 0.66 0.264622
Target:  5'- --cCAGa-UGCCGGC-UCGGCCaUGGCu -3'
miRNA:   3'- cccGUCgaGCGGCCGaAGCCGG-ACCG- -5'
30435 5' -62.5 NC_006548.1 + 22820 0.66 0.258064
Target:  5'- aGGCGaCUcCGCC-GCUUCGGgaCUGGCc -3'
miRNA:   3'- cCCGUcGA-GCGGcCGAAGCCg-GACCG- -5'
30435 5' -62.5 NC_006548.1 + 33983 0.66 0.258064
Target:  5'- cGGGcCAGUaacagUCaugauGUCGGCacUGGCCUGGCc -3'
miRNA:   3'- -CCC-GUCG-----AG-----CGGCCGaaGCCGGACCG- -5'
30435 5' -62.5 NC_006548.1 + 2377 0.67 0.25164
Target:  5'- cGGCGGUUUuccauccgaGCCGGCUggaacCCUGGCu -3'
miRNA:   3'- cCCGUCGAG---------CGGCCGAagcc-GGACCG- -5'
30435 5' -62.5 NC_006548.1 + 29495 0.67 0.25164
Target:  5'- uGGGcCAGCUgcUGCgCGGCaacgUCGGCCa-GCg -3'
miRNA:   3'- -CCC-GUCGA--GCG-GCCGa---AGCCGGacCG- -5'
30435 5' -62.5 NC_006548.1 + 7504 0.67 0.245348
Target:  5'- cGGCAccuuGCUCcUCGGCcugcUCGGCCaacuUGGCg -3'
miRNA:   3'- cCCGU----CGAGcGGCCGa---AGCCGG----ACCG- -5'
30435 5' -62.5 NC_006548.1 + 27058 0.67 0.245348
Target:  5'- cGGCGGaCUCGCCGacgcugcucaGCUUaCGGCCagcuugcucGGCc -3'
miRNA:   3'- cCCGUC-GAGCGGC----------CGAA-GCCGGa--------CCG- -5'
30435 5' -62.5 NC_006548.1 + 19243 0.67 0.245348
Target:  5'- uGGCAGCccuugUCGCCGGCcuaccugCGGCgCaaGCg -3'
miRNA:   3'- cCCGUCG-----AGCGGCCGaa-----GCCG-GacCG- -5'
30435 5' -62.5 NC_006548.1 + 28623 0.67 0.239187
Target:  5'- aGGCGGCgaagacaaaGCC-GCUgCGcGCCUGGCc -3'
miRNA:   3'- cCCGUCGag-------CGGcCGAaGC-CGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.