miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30436 3' -56.8 NC_006548.1 + 36514 0.66 0.495709
Target:  5'- gGUUGA-CCuugacCUCGUcgagGUGGGCUCGGCc -3'
miRNA:   3'- -UAACUaGGu----GAGCG----CGCCUGAGCCGu -5'
30436 3' -56.8 NC_006548.1 + 16484 0.67 0.454242
Target:  5'- ----cUCCACUCGCgGCuGACUaCGGCc -3'
miRNA:   3'- uaacuAGGUGAGCG-CGcCUGA-GCCGu -5'
30436 3' -56.8 NC_006548.1 + 22612 0.67 0.453229
Target:  5'- --cGuUCCGCUCGCcgaacugccggaaGCGGAaCUgCGGCAg -3'
miRNA:   3'- uaaCuAGGUGAGCG-------------CGCCU-GA-GCCGU- -5'
30436 3' -56.8 NC_006548.1 + 1244 0.67 0.434224
Target:  5'- --cGGUCUuuGCUUGCGCGcGCggugCGGCAg -3'
miRNA:   3'- uaaCUAGG--UGAGCGCGCcUGa---GCCGU- -5'
30436 3' -56.8 NC_006548.1 + 22905 0.67 0.414727
Target:  5'- --cGAUUCAgUCGCGCGG---CGGCGa -3'
miRNA:   3'- uaaCUAGGUgAGCGCGCCugaGCCGU- -5'
30436 3' -56.8 NC_006548.1 + 38260 0.68 0.386515
Target:  5'- --cGAUgCAUUCGCGCuGGucCUCGGUg -3'
miRNA:   3'- uaaCUAgGUGAGCGCG-CCu-GAGCCGu -5'
30436 3' -56.8 NC_006548.1 + 18025 0.68 0.368423
Target:  5'- --aGAU-CACUCGCGCccgccaGGCUCGGCc -3'
miRNA:   3'- uaaCUAgGUGAGCGCGc-----CUGAGCCGu -5'
30436 3' -56.8 NC_006548.1 + 12231 0.69 0.341549
Target:  5'- -aUGcgCCGCUCGaaccagcaCGCGGcgauacuGCUCGGCGg -3'
miRNA:   3'- uaACuaGGUGAGC--------GCGCC-------UGAGCCGU- -5'
30436 3' -56.8 NC_006548.1 + 32200 0.7 0.286934
Target:  5'- gGUUGAcgucaUUCACUCG-GCGuACUCGGCAg -3'
miRNA:   3'- -UAACU-----AGGUGAGCgCGCcUGAGCCGU- -5'
30436 3' -56.8 NC_006548.1 + 12875 0.75 0.141333
Target:  5'- --cGcgCCGCUCGCGCGGcACU-GGCGa -3'
miRNA:   3'- uaaCuaGGUGAGCGCGCC-UGAgCCGU- -5'
30436 3' -56.8 NC_006548.1 + 15004 1.07 0.000592
Target:  5'- cAUUGAUCCACUCGCGCGGACUCGGCAg -3'
miRNA:   3'- -UAACUAGGUGAGCGCGCCUGAGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.