Results 1 - 20 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30436 | 5' | -58 | NC_006548.1 | + | 21798 | 0.66 | 0.478284 |
Target: 5'- -gCACCGGC-GCGUccAGGCcGUGGuCUu -3' miRNA: 3'- gaGUGGCCGuCGUA--UCCGcCACCuGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 29159 | 0.66 | 0.448088 |
Target: 5'- --gACCGGCcuGC-UGGGCGGccUGGAUa -3' miRNA: 3'- gagUGGCCGu-CGuAUCCGCC--ACCUGg -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 36697 | 0.66 | 0.448088 |
Target: 5'- -gCGCCGGCcuCAUGcGGCGcUGGcACCg -3' miRNA: 3'- gaGUGGCCGucGUAU-CCGCcACC-UGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 28892 | 0.66 | 0.488571 |
Target: 5'- -cCACCGGCcaaaccGUcgAGGCGGccGGcGCCg -3' miRNA: 3'- gaGUGGCCGu-----CGuaUCCGCCa-CC-UGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 16973 | 0.67 | 0.428555 |
Target: 5'- -cCGCCGGCAuGC--AGGCGGagcugcUGGaaGCCg -3' miRNA: 3'- gaGUGGCCGU-CGuaUCCGCC------ACC--UGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 28067 | 0.67 | 0.400222 |
Target: 5'- cCUCACagcaGGCGGCu--GGCGGccUGcaGGCCg -3' miRNA: 3'- -GAGUGg---CCGUCGuauCCGCC--AC--CUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 37389 | 0.67 | 0.381113 |
Target: 5'- gUCACCGGCAGCGgcucaaaucAGaaccgccuagcucGCuGGUGGGCa -3' miRNA: 3'- gAGUGGCCGUCGUa--------UC-------------CG-CCACCUGg -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 36279 | 0.67 | 0.400222 |
Target: 5'- -cCGCgGGguGCGgucGGGCGG-GGuCCa -3' miRNA: 3'- gaGUGgCCguCGUa--UCCGCCaCCuGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 36830 | 0.68 | 0.347279 |
Target: 5'- cCUgGCCGGguGCu--GGUGuGUGGugUg -3' miRNA: 3'- -GAgUGGCCguCGuauCCGC-CACCugG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 8281 | 0.68 | 0.373113 |
Target: 5'- --aGCCGGCAGCGacccGGCGGUuGAUUu -3' miRNA: 3'- gagUGGCCGUCGUau--CCGCCAcCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 15595 | 0.69 | 0.322749 |
Target: 5'- --aACUGGCAGCAgcccgaGGGCGGccGACUg -3' miRNA: 3'- gagUGGCCGUCGUa-----UCCGCCacCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 15800 | 0.69 | 0.314865 |
Target: 5'- -cCACCGGCcuggguaucGGC-UGGGCGGacgacgcucaGGACCa -3' miRNA: 3'- gaGUGGCCG---------UCGuAUCCGCCa---------CCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 20852 | 0.7 | 0.28479 |
Target: 5'- uCUgGCgCGGCAGC--AGGCGGccGGCCu -3' miRNA: 3'- -GAgUG-GCCGUCGuaUCCGCCacCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 23358 | 0.71 | 0.225492 |
Target: 5'- -cCACUGGCcaAGCGUuacgGGGUugucaccgGGUGGACCa -3' miRNA: 3'- gaGUGGCCG--UCGUA----UCCG--------CCACCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 5014 | 0.72 | 0.208187 |
Target: 5'- aUCACUGG-AGCAUucucgguguucAGGCGGUGcACCa -3' miRNA: 3'- gAGUGGCCgUCGUA-----------UCCGCCACcUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 845 | 0.73 | 0.163021 |
Target: 5'- gCUUGCCGGCGGCucgcuugcUGGGCuGUGGuuGCCa -3' miRNA: 3'- -GAGUGGCCGUCGu-------AUCCGcCACC--UGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 4613 | 0.73 | 0.172228 |
Target: 5'- --gGCUGGCAaGCAguuguccgAGGUGGUGGACg -3' miRNA: 3'- gagUGGCCGU-CGUa-------UCCGCCACCUGg -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 27240 | 0.74 | 0.150041 |
Target: 5'- -aCGCuCGGCauugugauaGGCGUucauGGCGGUGGACUg -3' miRNA: 3'- gaGUG-GCCG---------UCGUAu---CCGCCACCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 22003 | 0.74 | 0.134198 |
Target: 5'- aUCACCGGCAGC--GGGUugcuGGUcGGAUCa -3' miRNA: 3'- gAGUGGCCGUCGuaUCCG----CCA-CCUGG- -5' |
|||||||
30436 | 5' | -58 | NC_006548.1 | + | 37546 | 0.74 | 0.138008 |
Target: 5'- -gCGCCGGCGGU-UGGGCuGaGUGGACUg -3' miRNA: 3'- gaGUGGCCGUCGuAUCCG-C-CACCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home