miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30437 3' -54.6 NC_006548.1 + 11769 0.66 0.624878
Target:  5'- gGAGCAGCUCCAggucguugccuacaAGcugGUCCugGugaccuuGGGCGc -3'
miRNA:   3'- gCUCGUCGAGGU--------------UC---UAGGugU-------CCUGC- -5'
30437 3' -54.6 NC_006548.1 + 1075 0.67 0.606707
Target:  5'- gGGGCuGCUCagCAAGAUCCACAucGCu -3'
miRNA:   3'- gCUCGuCGAG--GUUCUAGGUGUccUGc -5'
30437 3' -54.6 NC_006548.1 + 20522 0.67 0.560509
Target:  5'- cCGcAGCAGcCUCUgccgccgcugcggAAGAgCCGCAGGGCa -3'
miRNA:   3'- -GC-UCGUC-GAGG-------------UUCUaGGUGUCCUGc -5'
30437 3' -54.6 NC_006548.1 + 8335 0.67 0.560509
Target:  5'- cCGGGUcgcugccGGCUCCAugaucugaggGGAUacCCAUGGGACGu -3'
miRNA:   3'- -GCUCG-------UCGAGGU----------UCUA--GGUGUCCUGC- -5'
30437 3' -54.6 NC_006548.1 + 29037 0.67 0.550485
Target:  5'- -cAGCAGCUCCAGGAccaagUCgACcGGAUc -3'
miRNA:   3'- gcUCGUCGAGGUUCU-----AGgUGuCCUGc -5'
30437 3' -54.6 NC_006548.1 + 9598 0.67 0.550485
Target:  5'- uCGAGCgcGGCgcgCCAGGuGUCCAuCGGGGuCGg -3'
miRNA:   3'- -GCUCG--UCGa--GGUUC-UAGGU-GUCCU-GC- -5'
30437 3' -54.6 NC_006548.1 + 30059 0.67 0.550485
Target:  5'- aGGGUGGUUCCGAGGUuuuUCGCAGG-Cu -3'
miRNA:   3'- gCUCGUCGAGGUUCUA---GGUGUCCuGc -5'
30437 3' -54.6 NC_006548.1 + 4084 0.68 0.51425
Target:  5'- cCGAGCAgGCUgaCGAGAUgcaaggugacccucCCGCGGGugGu -3'
miRNA:   3'- -GCUCGU-CGAg-GUUCUA--------------GGUGUCCugC- -5'
30437 3' -54.6 NC_006548.1 + 24601 0.68 0.506685
Target:  5'- gCGGGCAGCUCgAucugcgaggcccAGAUcgCCACAGcGAUGu -3'
miRNA:   3'- -GCUCGUCGAGgU------------UCUA--GGUGUC-CUGC- -5'
30437 3' -54.6 NC_006548.1 + 26569 0.68 0.491702
Target:  5'- uCGAGCAGUaCCAGGAgauggcagugauguUCCGCcaacucaAGGGCa -3'
miRNA:   3'- -GCUCGUCGaGGUUCU--------------AGGUG-------UCCUGc -5'
30437 3' -54.6 NC_006548.1 + 19129 0.69 0.482179
Target:  5'- gCGGGCAGCgcagcgcugggagaUCCGAGcgggcuUCUGCAGGAUa -3'
miRNA:   3'- -GCUCGUCG--------------AGGUUCu-----AGGUGUCCUGc -5'
30437 3' -54.6 NC_006548.1 + 38220 0.69 0.454164
Target:  5'- uCGAGCAGCUCgGccGAUUCuuGCGGGAgGg -3'
miRNA:   3'- -GCUCGUCGAGgUu-CUAGG--UGUCCUgC- -5'
30437 3' -54.6 NC_006548.1 + 3730 0.7 0.385938
Target:  5'- aGAGCGGCagCGgcAGAUCCgACAGGAa- -3'
miRNA:   3'- gCUCGUCGagGU--UCUAGG-UGUCCUgc -5'
30437 3' -54.6 NC_006548.1 + 8992 0.7 0.385938
Target:  5'- --cGCAGC-CCucaauGGAUgCACAGGGCGa -3'
miRNA:   3'- gcuCGUCGaGGu----UCUAgGUGUCCUGC- -5'
30437 3' -54.6 NC_006548.1 + 10218 0.72 0.324832
Target:  5'- aCGAGCAGCUCUugcugGAGGUCUACcGcGCGa -3'
miRNA:   3'- -GCUCGUCGAGG-----UUCUAGGUGuCcUGC- -5'
30437 3' -54.6 NC_006548.1 + 27747 0.78 0.133611
Target:  5'- uGAGCAGCUCCAggccaagccguucggAGAUCuCGC-GGACGu -3'
miRNA:   3'- gCUCGUCGAGGU---------------UCUAG-GUGuCCUGC- -5'
30437 3' -54.6 NC_006548.1 + 15726 1.1 0.000596
Target:  5'- cCGAGCAGCUCCAAGAUCCACAGGACGg -3'
miRNA:   3'- -GCUCGUCGAGGUUCUAGGUGUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.