Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30437 | 5' | -55.2 | NC_006548.1 | + | 2053 | 0.73 | 0.229186 |
Target: 5'- gUACGCCUggaucgcgucggcGAUguugucGUCGACGCCcGCGAACu -3' miRNA: 3'- -AUGCGGG-------------UUA------CAGCUGCGGaCGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 7779 | 0.71 | 0.307452 |
Target: 5'- aUGCGCUCGAUgucgucuagGUCGAgGCCUGC-AACu -3' miRNA: 3'- -AUGCGGGUUA---------CAGCUgCGGACGcUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 32963 | 0.71 | 0.315426 |
Target: 5'- cGCGCCCGGUGcagCGGCGCUgGCcGGCc -3' miRNA: 3'- aUGCGGGUUACa--GCUGCGGaCGcUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 15701 | 0.7 | 0.366522 |
Target: 5'- aUACGCgCCAc-GUCGAgCGUCUGCaGAACa -3' miRNA: 3'- -AUGCG-GGUuaCAGCU-GCGGACG-CUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 26403 | 0.67 | 0.51675 |
Target: 5'- uUGCGCCUGGaagaaacacUGUCGGCGgcucaCCUGCGGc- -3' miRNA: 3'- -AUGCGGGUU---------ACAGCUGC-----GGACGCUug -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 36778 | 0.67 | 0.53874 |
Target: 5'- cGCGCCg---GUCGACuCgCUGCGAAUg -3' miRNA: 3'- aUGCGGguuaCAGCUGcG-GACGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 33528 | 0.66 | 0.572289 |
Target: 5'- -cCGCCgCAuccUCGACGUCaGCGAGCu -3' miRNA: 3'- auGCGG-GUuacAGCUGCGGaCGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 21337 | 0.73 | 0.217609 |
Target: 5'- aUGCGCUgAcgGcCGACGCCcagggGCGAGCg -3' miRNA: 3'- -AUGCGGgUuaCaGCUGCGGa----CGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 29026 | 0.66 | 0.583588 |
Target: 5'- aGCGCCUucGGUGUC-AC-CCgugGCGAGCa -3' miRNA: 3'- aUGCGGG--UUACAGcUGcGGa--CGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 12847 | 0.66 | 0.572289 |
Target: 5'- aUACaGCUCAGgugccgGUaggaagucgCGACuGCCUGCGAACa -3' miRNA: 3'- -AUG-CGGGUUa-----CA---------GCUG-CGGACGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 27276 | 0.67 | 0.53874 |
Target: 5'- aGCGCgUugcucgGUCGcCGCCUGCuGGACg -3' miRNA: 3'- aUGCGgGuua---CAGCuGCGGACG-CUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 12575 | 0.67 | 0.53874 |
Target: 5'- gGCGCCgGAUGcCGAgGCCaGCuuACg -3' miRNA: 3'- aUGCGGgUUACaGCUgCGGaCGcuUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 23653 | 0.68 | 0.473926 |
Target: 5'- --aGUCCuucagGGUGUCGugGCUgaaggUGCGAGCg -3' miRNA: 3'- augCGGG-----UUACAGCugCGG-----ACGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 4059 | 0.69 | 0.384776 |
Target: 5'- gUACaCCCcgcugaugGAUGUUGACGCCaugaGCGAGCa -3' miRNA: 3'- -AUGcGGG--------UUACAGCUGCGGa---CGCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 7007 | 0.7 | 0.375574 |
Target: 5'- -cCGCCCGAUGUCGAUcagcgcgaucaGCC-GCGcGCu -3' miRNA: 3'- auGCGGGUUACAGCUG-----------CGGaCGCuUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 14506 | 0.71 | 0.315426 |
Target: 5'- gUGCGUCCAGgucGUCGcCGCCUGgGcACg -3' miRNA: 3'- -AUGCGGGUUa--CAGCuGCGGACgCuUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 6288 | 0.73 | 0.223638 |
Target: 5'- gGCGCCCAcgGUCGAguugUGCC-GgGAGCu -3' miRNA: 3'- aUGCGGGUuaCAGCU----GCGGaCgCUUG- -5' |
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30437 | 5' | -55.2 | NC_006548.1 | + | 15687 | 1.09 | 0.000595 |
Target: 5'- uUACGCCCAAUGUCGACGCCUGCGAACa -3' miRNA: 3'- -AUGCGGGUUACAGCUGCGGACGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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